View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_high_39 (Length: 300)
Name: NF0914_high_39
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_39 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 12220113 - 12219810
Alignment:
| Q |
1 |
ctccatatacaattttagacaattcgtgtgctagccctgttcaccattgacaaggagtaacaaagatattaatgtatttagatagaactaaaaactaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
12220113 |
ctccatatacaattttagacaattcgtgtgctaacactgttcaccattgacaaggagtaataaagattctaatgtatttagatagaactaaaaacta-ct |
12220015 |
T |
|
| Q |
101 |
ccttttcatatcttgatatatgcgacttttctaatgttgattaggccgctagtataaaagacaga--atcaatatcaaaaatcgtctctgtaaattttgc |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
12220014 |
ccttttcagatcttgatatatgcgacttttctaatgttgattaggccactagtataaaagacagagaatcagcatcagaaatcgtctctgtaaattttgc |
12219915 |
T |
|
| Q |
199 |
ata---cttcacacctttgactcggataatacttttagtatgttcagatttctatttgatttgaaaaagaaattctaataattttataaatatcttcttt |
295 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12219914 |
atattacttcacacctttgactcggataatacttttagtatgttcagatttctatttgatttgaaaaagaaattctaataattttataaataccttcttt |
12219815 |
T |
|
| Q |
296 |
atatt |
300 |
Q |
| |
|
||||| |
|
|
| T |
12219814 |
atatt |
12219810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7425421 - 7425658
Alignment:
| Q |
1 |
ctccatatacaattttagacaattcgtgtgctagccctgttcaccattgacaaggagtaacaaagatattaatgtatttagatagaactaaaaactaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
7425421 |
ctccatatacaattttagacaattcgtgtgctaacactgttcaccattgacaaggagtaaagaagatattaatgtatttagatggaactaaaaactaatt |
7425520 |
T |
|
| Q |
101 |
-ccttttcatatcttgatatatgcgacttttctaatgttgattaggccgctagtataaaagacagaatcaatatcaaaaatcgtctctgtaaattttgca |
199 |
Q |
| |
|
||| | || || ||||||||||| ||||||| ||||||||| |||| || |||||||||||||||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
7425521 |
ccctctgcagatattgatatatgcctcttttctgatgttgattgggccactggtataaaagacagaatcagtatcagaaatcgtctctatcaattttgca |
7425620 |
T |
|
| Q |
200 |
---tacttcacacctttgactcggataatacttttagtat |
236 |
Q |
| |
|
||||||||| ||| ||||||||| || ||||||||| |
|
|
| T |
7425621 |
tattacttcacaactt--actcggatattatttttagtat |
7425658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 182 times since January 2019
Visitors: 6695