View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_high_46 (Length: 276)
Name: NF0914_high_46
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 45609299 - 45609103
Alignment:
| Q |
54 |
agaataatagccaaatgaatcactcctaaacaatggattagtgttcatgttcatgttgctggtacgcttctggttctgaattagagacacggtcatagcg |
153 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
45609299 |
agaataatagccaaatgaatctctcctgaacaatggattagtgttcatattcatgttgttgctacgcttctggttctgaattagagaaatggtcatggcg |
45609200 |
T |
|
| Q |
154 |
ttacaccccctaaaatgttataaacagaaaaatacaaataaagatttatgtgtctaatgaaat---aaaattgagttgtattaaatagtgtagatag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45609199 |
ttacaccccctaaaatgttataaacagaaaaatacagataaagatttatgtgtctagagtaataagaaaattgagttgtattaaatagtgtagatag |
45609103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 45611630 - 45611511
Alignment:
| Q |
54 |
agaataatagccaaatgaatcactcctaaacaatggattagtgttcatgttcatgttgctggtacgcttctggttctgaattagagacacggtcatagcg |
153 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| | || ||||||||||||| ||||||||||||| |||| | | |
|
|
| T |
45611630 |
agaataatagccaaatgaatcactcctgaacaatggactagtgttcatgttgatgctattgctacgcttctggttttgaattagagacatattcatggtg |
45611531 |
T |
|
| Q |
154 |
ttacaccccctaaaatgtta |
173 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
45611530 |
tgacaccccctaaaatgtta |
45611511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1023 times since January 2019
Visitors: 6708