View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0914_high_66 (Length: 235)

Name: NF0914_high_66
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0914_high_66
NF0914_high_66
[»] chr2 (12 HSPs)
chr2 (111-235)||(9291288-9291412)
chr2 (135-232)||(8574219-8574317)
chr2 (133-232)||(9315401-9315502)
chr2 (61-118)||(9295410-9295467)
chr2 (171-232)||(9061970-9062031)
chr2 (151-232)||(10371160-10371241)
chr2 (173-232)||(10351487-10351545)
chr2 (135-232)||(9273915-9274012)
chr2 (151-232)||(9068814-9068894)
chr2 (61-95)||(9287957-9287991)
chr2 (61-95)||(10371201-10371235)
chr2 (171-216)||(10347050-10347095)
[»] chr8 (1 HSPs)
chr8 (151-232)||(41968168-41968254)
[»] chr4 (1 HSPs)
chr4 (172-232)||(26574289-26574348)
[»] chr1 (1 HSPs)
chr1 (171-231)||(29462108-29462167)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 9291412 - 9291288
Alignment:
Q  111 attccacactgctttggtgtgtgtggagaaaattattttatagaaattggcctgccatatattacttcaaatttatgcatagttacattcaaaagcatgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291412 attccacactgctttggtgtgtgtggagaaaattattttatagaaattggcctgccatatattacttcaaatttatgcatagttacattcaaaagcatgg 9291313  T
Q  211 ttttttatcaactattcttttgcga 235  Q
    |||||||||||||||||||||||||    
T  9291312 ttttttatcaactattcttttgcga 9291288  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 8574219 - 8574317
Alignment:
Q  135 ggagaaaattattttatagaaattggcctgccat-atattacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    |||||||||| || ||||||||||||||| |||| | ||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  8574219 ggagaaaattgttatatagaaattggcctaccatgaaattactctaaatttatgcatagttccattcaaaagcacggttttttatcaactattcttttg 8574317  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 9315502 - 9315401
Alignment:
Q  133 gtggagaaaattattttatagaaattggcctgccatatattacttcaaatttatgcatagttacattcaaaagcatggtt--ttttatcaactattcttt 230  Q
    |||||||||||| || | ||||||||||||| | |||||||||| ||||||||| ||||||| |||||||||||||||||  ||||||||| ||||||||    
T  9315502 gtggagaaaattgttatttagaaattggcctactatatattactacaaatttattcatagttccattcaaaagcatggttttttttatcaattattcttt 9315403  T
Q  231 tg 232  Q
    ||    
T  9315402 tg 9315401  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 9295467 - 9295410
Alignment:
Q  61 atgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacattccaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9295467 atgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacatttcaca 9295410  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 9061970 - 9062031
Alignment:
Q  171 attacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  9061970 attactccaaatttatgcatagtttcattcaaaagcatgggtttttatcaactattcttttg 9062031  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 10371241 - 10371160
Alignment:
Q  151 tagaaattggcctgccat-atattacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    ||||||||||||| |||| | |||||| ||||||||||||||||| | |||||||||||||| |||||||| |||||||||||    
T  10371241 tagaaattggcctaccatgaaattactccaaatttatgcatagttcctttcaaaagcatggt-ttttatcatctattcttttg 10371160  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 10351545 - 10351487
Alignment:
Q  173 tacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    |||| ||||||||||||||||| | ||||||||||| | |||||||||||||||||||||    
T  10351545 tactccaaatttatgcatagttcctttcaaaagcat-gatttttatcaactattcttttg 10351487  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 9274012 - 9273915
Alignment:
Q  135 ggagaaaattattttatagaaattggcctgccat-atattacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    |||||||||| || | ||||||||||||| | || | |||| || ||||||| |||||||| | ||||||||||| ||||||||||||||||| |||||    
T  9274012 ggagaaaattgttatttagaaattggcctacaatgaaattattttaaatttaagcatagttcctttcaaaagcat-gttttttatcaactatttttttg 9273915  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 9068814 - 9068894
Alignment:
Q  151 tagaaattggcctgccat-atattacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    ||||||||||||| |||| | |||||| |||||  ||||||| || | |||||||| |||| |||||||||||||||||||||    
T  9068814 tagaaattggcctaccatgaaattactccaaat--atgcataattcctttcaaaagtatggctttttatcaactattcttttg 9068894  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 9287957 - 9287991
Alignment:
Q  61 atgcctaaatttggagtaatttcatggtaggccaa 95  Q
    |||| ||||||||||||||||||||||||||||||    
T  9287957 atgcataaatttggagtaatttcatggtaggccaa 9287991  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 10371201 - 10371235
Alignment:
Q  61 atgcctaaatttggagtaatttcatggtaggccaa 95  Q
    |||| ||||||||||||||||||||||||||||||    
T  10371201 atgcataaatttggagtaatttcatggtaggccaa 10371235  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 10347095 - 10347050
Alignment:
Q  171 attacttcaaatttatgcatagttacattcaaaagcatggtttttt 216  Q
    |||||| ||||||||||||||||| | ||||||| |||||||||||    
T  10347095 attactccaaatttatgcatagttcctttcaaaaacatggtttttt 10347050  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 41968168 - 41968254
Alignment:
Q  151 tagaaattggcctgccat-atattacttcaaatttatgcatagttacattcaaaagcatgg----ttttttatcaactattcttttg 232  Q
    ||||||||||||| |||| | |||||| | ||||||||||||||| | |||| ||||||||    ||||||||||||||||||||||    
T  41968168 tagaaattggcctaccatgaaattactcctaatttatgcatagttcctttcagaagcatggttttttttttatcaactattcttttg 41968254  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 26574348 - 26574289
Alignment:
Q  172 ttacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattcttttg 232  Q
    ||||| ||| ||||||||||||| | || |||||||||| |||| ||||||||||||||||    
T  26574348 ttactccaattttatgcatagttcctttaaaaagcatggctttt-atcaactattcttttg 26574289  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 29462108 - 29462167
Alignment:
Q  171 attacttcaaatttatgcatagttacattcaaaagcatggttttttatcaactattctttt 231  Q
    ||||||||||||||| ||||| |||| |||||||   |||||||||||| |||||||||||    
T  29462108 attacttcaaatttaagcataattactttcaaaaagttggttttttatc-actattctttt 29462167  T

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