View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_high_9 (Length: 543)
Name: NF0914_high_9
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 237 - 445
Target Start/End: Original strand, 38225186 - 38225394
Alignment:
| Q |
237 |
ctactactccccctcgagcaaaaattggcccttcagaaattgttcaaataaaaaagtgctcttttattttactaatactgatgcaagccagattaccttt |
336 |
Q |
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| T |
38225186 |
ctactactccccctcgagcaaaaattggccctgcagaaattgttcaaataaaaaagtgctcttttattttactaatactgatgcaagccagattaccttt |
38225285 |
T |
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| Q |
337 |
taacagcaaagatatgaagcaaaagaacaaatattaaagtttctccggtgcttgttccctcgtcatggtcaaccaaagccggtccttttgaagaagctgc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225286 |
taacagcaaagatatgaagcaaaagaacaaatattaaagtttctccggtgcttgttccctcgtcatggtcaaccaaagccggtccttttgaagaagctgc |
38225385 |
T |
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| Q |
437 |
acacactat |
445 |
Q |
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||||||||| |
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| T |
38225386 |
acacactat |
38225394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 38224965 - 38225119
Alignment:
| Q |
13 |
aatatattttctgatacaatttaaagacagttttcaaaatttgcaacttggatatatcaaattataatgagagggtccaattttatatctctaactatta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224965 |
aatatattttctgatacaatttaaagacagttttcaaaatttgcaacttggatatatcaaattataatgagagggtccaattttatatctctaactatta |
38225064 |
T |
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| Q |
113 |
aatgttttctaaaacaaattttaggcacccgcaggatttgaggatctatgtctagttc |
170 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38225065 |
aatgttttc---aacaaattttaggcacccacaggatttgaggatctatgtctagttc |
38225119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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