View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0914_low_101 (Length: 212)

Name: NF0914_low_101
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0914_low_101
NF0914_low_101
[»] chr1 (1 HSPs)
chr1 (83-212)||(10117002-10117129)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 10117002 - 10117129
Alignment:
Q  83 ataatatgtagcaatgatggtttggactaatggtgcgttaacatcgacacatgtagttagattcaatcacttcaattannnnnnnnnaactttttacatg 182  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  10117002 ataatatgtagcaatgatggtttggactaatggtgtgttaacatcgacacatgtagttagattcaatcacttcaatt--ttttttttaactttttacatg 10117099  T
Q  183 tttacttgttgatgtcagcatcgtgtagcg 212  Q
    ||||||||||||||||||||||||||||||    
T  10117100 tttacttgttgatgtcagcatcgtgtagcg 10117129  T

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