View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_13 (Length: 512)
Name: NF0914_low_13
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 31 - 372
Target Start/End: Original strand, 44734185 - 44734521
Alignment:
| Q |
31 |
acaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggctaattgatgatcaaatcaaactactaagttagttaaaacacttgaaaa |
130 |
Q |
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| T |
44734185 |
acaagaggtccgcacccaaaccaagcatccaaagtggaagacccgttttggctaattgatgatcaaatcaaacta---agttagttaaaacacttgaaaa |
44734281 |
T |
|
| Q |
131 |
ttcaactgacac--aacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggtactgttgttgtcgcgggaatgccactgctatttaa |
228 |
Q |
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| T |
44734282 |
ctcaactgacacacaacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggttctgttgttgtcgcgggaatgccactgctatttaa |
44734381 |
T |
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| Q |
229 |
agccatcacaaacgacttaaggacccttttcacacnnnnnnnnnnnnggactaatgagtaatgaatgaccccacctagcatattctttctttctatcctt |
328 |
Q |
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| T |
44734382 |
agtcatcacaaacgacttaaggacccttttcacacaaaaacaaaaaaggactaatgagt----aatgaccccacctagcatattctttctttctatcctt |
44734477 |
T |
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| Q |
329 |
ttaacacatttacattgagagggatctattttattcctaaatgg |
372 |
Q |
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| T |
44734478 |
ttaacacatttacattgagagggatctattttattcctaaatgg |
44734521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 2259702 - 2259650
Alignment:
| Q |
31 |
acaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggct |
83 |
Q |
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|||||||||||| |||||| ||||||| ||| || || ||||||||||||||| |
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| T |
2259702 |
acaagaggtccggacccaatccaagcaaccaaagagggagacccgttttggct |
2259650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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