View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_14 (Length: 511)
Name: NF0914_low_14
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 70 - 495
Target Start/End: Original strand, 9358608 - 9359036
Alignment:
| Q |
70 |
ttttcttccatataatactgtttcttttattatatttctgtcagtctttcttaccgcatggtttgctggcatccggttccaatggataagtacaataatc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
9358608 |
ttttcttccatataatactgtttcttttattatatttctgtcagtatttcttaccgcatggtttgctgacatccggtcccaatggataaatacaataatc |
9358707 |
T |
|
| Q |
170 |
atcatttggatgataacattcaacatttcctatagtgtgattgaagtagcacttttgtgtatcgccgcaagaatctttacaagcaccactcatccatgat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9358708 |
atcatttggatgataacattcaacatttcctatagtgtgattgaagtagcactcttgtgtatcgccgcaagaatctttacaagcaccactcaaccatgat |
9358807 |
T |
|
| Q |
270 |
agctgaaatccatatagtagcattccatgaatttcctcgtatgaaagtggtcgatgtcgatctgatacacctt------ctctgacactaggaaagtatg |
363 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||| | || |
|
|
| T |
9358808 |
acctgaaatccatagagtagcattccatgaatttcctggtatgaaagtg------atcgatctggtacaccttctctgactctgacattaggaaaatctg |
9358901 |
T |
|
| Q |
364 |
aagatgacatagcaacaagcttcacttggcaataatcttttaatctcccaactaaaaagtggtgtttcctatagtaagactcgtgggactcatagtcttc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| | | || |||||||||| |
|
|
| T |
9358902 |
aagatgacatagcaacaagcttcacttggcaataatcttttaatctcccaactgaaaagtggtgtgtcctatagtaaggctcctcgtacccatagtcttc |
9359001 |
T |
|
| Q |
464 |
atgttcatag---tccacgtggaagtctgccgcaa |
495 |
Q |
| |
|
|| ||||||| ||||||| |||||||||||||| |
|
|
| T |
9359002 |
atcttcatagtcctccacgtagaagtctgccgcaa |
9359036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 424
Target Start/End: Original strand, 9335068 - 9335242
Alignment:
| Q |
247 |
tacaagcaccactcatccatgatagctgaaatccatatagtagcattccatgaatttcctcgtatgaaagtggtcgatgtcgatctgatacaccttctct |
346 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
9335068 |
tacaagcactgctcatccacgatagctgaaatccatagagtagcattccatgaatttcctggtatgaaagtgatcgat------ctggtacaccttctct |
9335161 |
T |
|
| Q |
347 |
gacact------aggaaagtatgaagatgacatagcaacaagcttcacttggcaataatcttttaatctcccaactaaaaagtg |
424 |
Q |
| |
|
||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9335162 |
gactctgacattaggaaaata---agatgacatagcaacaagcttcacttggcaataatcttttaatctcccaactgaaaagtg |
9335242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 237 - 412
Target Start/End: Complemental strand, 9245649 - 9245456
Alignment:
| Q |
237 |
caagaatctttacaagcaccactcatccatgatagctgaaatccatatagtagcattccatgaatttcctcgtatgaaagtggtcg------atgtcgat |
330 |
Q |
| |
|
||||| ||| ||||||| | |||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9245649 |
caagattctctacaagctctgctcaaccacgatagctgaaaaccatagagtagcattccatgaatttcctcgtatgaaagtggtcgatgttgatgtcgat |
9245550 |
T |
|
| Q |
331 |
ctgatacaccttctctga------------cactaggaaagtatgaagatgacatagcaacaagcttcacttggcaataatcttttaatctccc |
412 |
Q |
| |
|
||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9245549 |
ctggtacaccttctctgaccttggcactgtcactaggaaaatctgaagatgacatagcaacaagcttcacttggcaatagtcttttaatctccc |
9245456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 9334822 - 9334894
Alignment:
| Q |
57 |
gtattttgcactattttcttccatataatactgtttcttttattatatttctgtcagtctttcttaccgcatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9334822 |
gtattttgcactattttcttccatataatactgtttcttttattatatttctgtcagtatttcttaccacatg |
9334894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 416
Target Start/End: Complemental strand, 15913340 - 15913150
Alignment:
| Q |
229 |
tatcgccgcaagaatctttacaagcaccactcatccatgatagctgaaatccatatagtagcattccatgaatttcctc---gtatgaaagtggtcgatg |
325 |
Q |
| |
|
||||||||||||| || |||||||||| || ||||| |||| || ||||||||| ||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
15913340 |
tatcgccgcaagattccctacaagcaccgctgatccaagataactcaaatccatagagtagcattgcatgaatatcctcctcgtatgaaaggggtcgat- |
15913242 |
T |
|
| Q |
326 |
tcgatctgatacaccttctct------gacactaggaaagtatgaagatgacatagcaacaagcttcacttggcaataatcttttaatctcccaact |
416 |
Q |
| |
|
||| |||||||||||| ||||||| |||| | ||| ||||||||||| |||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
15913241 |
-----ctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatcttttaatttcccaact |
15913150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 582 times since January 2019
Visitors: 6696