View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_16 (Length: 490)
Name: NF0914_low_16
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 476
Target Start/End: Original strand, 4775852 - 4776302
Alignment:
| Q |
30 |
attaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagataatattag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775852 |
attaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagataatattag |
4775951 |
T |
|
| Q |
130 |
ggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgcccaatctgcatcacaaaagcttgtgaggcttgtatttgaagatct |
225 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4775952 |
ggccaaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgcctaatctgcatcacaaaagcttgtgaggtttgtatttgaagatct |
4776051 |
T |
|
| Q |
226 |
tgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcatatctgtcacagtaggagcttgcatttgttatgct |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776052 |
tgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcatatctgtcacagtaggagcttgcatttgttatgct |
4776151 |
T |
|
| Q |
326 |
agtttattcactggaaatgctatgtctgggcgagtgattgaaaggtagtgtaaggcaccaagtatactgcgaaattccttactgtcacagtatgtggagt |
425 |
Q |
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| T |
4776152 |
agtttattcactggaaatgcaatgtctgggcgagtgattgaaaggtagtgtaaggcaccaagcatactgcgaaattccttactgtcacagtatgtggagt |
4776251 |
T |
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| Q |
426 |
cgggtttaggttgtgagcagaatgaggtggccatgggagtagacacaggtt |
476 |
Q |
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| T |
4776252 |
cgggtttaggttgtgagcagaatgaggtggccatgggagtagacacaggtt |
4776302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 43061213 - 43061400
Alignment:
| Q |
30 |
attaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagataatattag |
129 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
43061213 |
attaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagataatattag |
43061312 |
T |
|
| Q |
130 |
ggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgcccaatctgcatcacaaaagcttgtgaggcttgt |
213 |
Q |
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|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43061313 |
ggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgcccaatctgcatcacaaaagtttgtgaggcttgt |
43061400 |
T |
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