View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_17 (Length: 485)
Name: NF0914_low_17
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 32197129 - 32196683
Alignment:
| Q |
9 |
caacaatatggtttctaatatcttttaagtgtcnnnnnnncatagcctcttctaattgggctttccagattttgagatgagttttaatcttaaggcagtt |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32197129 |
caacaatatggtttctaatatcttttaagtgtctttttt-catagcctcttctaattgggctttccagattttgagacgagttttaatcttaaggcagtt |
32197031 |
T |
|
| Q |
109 |
tgatctcaacgttgcaagggaataacaaggcaagcttttcatttatcttctaaatcataaatttgggaaccgaggatcaacactgatcctgaaaggttct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32197030 |
tgatctcaacgttgcaagggaataacaaggcaagcttttcatttatcttctaaatcataaatttgggaaccgaggatcaacactgatcctgaaaggttct |
32196931 |
T |
|
| Q |
209 |
ttaatagtttttgaaacaattagtacatgcttgatgattggagaataaccttctcaacatccttgatgnnnnnnntaacagaacctattttttgatatag |
308 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32196930 |
ttaatagtttttaaaacaattagtacatgtttgatgattggagaataaccttctcaacatccttgatgaaaaaaataacagaacctattttttgatatag |
32196831 |
T |
|
| Q |
309 |
aaaccaagaactgtaaaaattacaatatgtaaactaaacttgtgacaaatatatcttaacaatgtaagattagttatatatatttatcatgcaaaaattt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32196830 |
aaaccaagaactgtaaaaattacaatatgtaaactaaacttgtgacaaatatatcttaacaatgtaagattagttatatatatttatcatgcaataattt |
32196731 |
T |
|
| Q |
409 |
aaagagacaagctatataactgagtaaataaatagttgtggggagaat |
456 |
Q |
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| T |
32196730 |
aaagagacaagctatataactgagtaaataaatagttgtggggagaat |
32196683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 32199603 - 32199185
Alignment:
| Q |
9 |
caacaatatggtttctaatatcttttaagtgtcnnnnnnncatagcctcttctaattgggctttccagattttgagatgagttttaatcttaaggcagtt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| |
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| T |
32199603 |
caacaatatggtttctaatatcttttaagtgtctttttt-catagcctcttataattgggctttccagattttgagacgagtttttatctgaaggcagtt |
32199505 |
T |
|
| Q |
109 |
tgatctcaacgttgcaagggaataacaaggcaagcttttcat--------------ttatcttctaaatcataaatttgggaaccgaggatcaacactga |
194 |
Q |
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| T |
32199504 |
tgatctcaacgttgcaagggaataacatggcaagcttttcatcaacttttttacaattatcttctaaatcataaatctgggaaccgaggatcaacactga |
32199405 |
T |
|
| Q |
195 |
tcctgaaaggttctttaatagtttttgaaacaattagtacatgcttgatgattggagaataaccttctcaacatccttgatgnnnnnnntaac-agaacc |
293 |
Q |
| |
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||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |
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| T |
32199404 |
tcctgaaagtttctttaatagtttttaaaacaaatagtacatgcttgatgattggagaataaccttctcaacatccttgatgaaaaaaataactaaaaca |
32199305 |
T |
|
| Q |
294 |
tattttttgatatagaaaccaagaactgtaaaaattacaatatgtaaactaaacttgtgacaaatatatcttaacaatgtaagattagttatatatattt |
393 |
Q |
| |
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| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32199304 |
tgttttttgatatagaaaccaag--------aaattacaatatgtaaactaaacttgtgacaaatatatcctaacaatgtaagattagttatatatattt |
32199213 |
T |
|
| Q |
394 |
atcatgcaaaaatttaaagagacaagct |
421 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
32199212 |
atcatgcaaaaattaaaagagacaagct |
32199185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 452
Target Start/End: Complemental strand, 32199126 - 32199095
Alignment:
| Q |
421 |
tatataactgagtaaataaatagttgtgggga |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
32199126 |
tatataactgagtaaataaatagttgtgggga |
32199095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 329
Target Start/End: Complemental strand, 44934026 - 44933871
Alignment:
| Q |
173 |
gggaaccgaggatcaacactgatcctgaaaggttctttaatagtttttgaaacaattagtacatgcttgatgattggagaataaccttctcaacatcctt |
272 |
Q |
| |
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|||||||||| |||||||||||||||||||| || |||||| ||||| |||||| |||||| |||| |||| |||| ||||||||||||| ||| |
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| T |
44934026 |
gggaaccgagtatcaacactgatcctgaaagtttatttaatgtcttttggaacaatctgtacatccttggtgatccaagaaagaccttctcaacattctt |
44933927 |
T |
|
| Q |
273 |
gatgnnnnnnntaacagaacctattttttgatatagaaaccaagaactgtaaaaatt |
329 |
Q |
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|||| |||||||||| | || ||||||||||||||||| ||||||||||| |
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| T |
44933926 |
gatgtataaaataacagaacc-agcttctgatatagaaaccaagacctgtaaaaatt |
44933871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 44926002 - 44925921
Alignment:
| Q |
53 |
gcctcttctaattgggctttccagattttgagatgagttttaatcttaaggcagtttgatctcaacgttgcaagggaataaca |
135 |
Q |
| |
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|||||||||| |||| ||||||| ||||||||| ||| | | |||| |||| |||||||||||| ||||||||||||||||| |
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| T |
44926002 |
gcctcttctagttggactttccaaattttgagacgagactca-tcttgaggcggtttgatctcaatgttgcaagggaataaca |
44925921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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