View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_18 (Length: 485)
Name: NF0914_low_18
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 207 - 466
Target Start/End: Complemental strand, 29736518 - 29736257
Alignment:
| Q |
207 |
gcaatgagaggtgtgattgaggttctataacttataccagcatacatttcagtagcaccaacaatgtttcttgctatagccttgacagataaactgagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29736518 |
gcaatgagaggtgtgattgaggttctataactta--ccagcatacatttcagtagcaccaacaatgtttcttgctatagccttgacagataaaccgagca |
29736421 |
T |
|
| Q |
307 |
tacacaaaaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctactgcatttcacaatgtacatcacatgctgatttataatgc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736420 |
tacacaaaaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctactgcatttcacaatgtacatcacatgctgatttataatgc |
29736321 |
T |
|
| Q |
407 |
aaagtcgatggtggttgcttatttttcaaggca----ttaaattttgtagtttacttttccctt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
29736320 |
aaagtcgatggtggttgcttatttttcaaggcattggttaatttttgttgtttacttttccctt |
29736257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 29736696 - 29736570
Alignment:
| Q |
29 |
aacatcatgaagattataatgaatttttcctctcttacatcgctgatctgggctaagcagctttctattctgacccattatttcatctgaaactacaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736696 |
aacatcatgaagattataatgaatttttcctctcttacatcgctgatctgggctaagcagctttctattctgacccattatttcatctgaaactacaaaa |
29736597 |
T |
|
| Q |
129 |
taataaacatgggaaatacttgcttgg |
155 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
29736596 |
taataaacatgggaaatacttgcttgg |
29736570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 297 - 461
Target Start/End: Original strand, 9719228 - 9719394
Alignment:
| Q |
297 |
aaactgagcatacacaaaaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctactgcatttcacaatgta--catcacatgct |
394 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||| |||| || ||| |||||| |||||||||||||||||| || || || ||||||| |
|
|
| T |
9719228 |
aaactcagcatacacaaaaagagaaccacccaaataaaggagaacttatttgaaaccatttttcttgctactgcatttcataacctactcaacacatgca |
9719327 |
T |
|
| Q |
395 |
gatttataatgcaaagtcgatggtggttgcttatttttcaaggcattaaattttgtagtttactttt |
461 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
9719328 |
tatttataatgcaaattcgatggtagttgcttatttttcaaggcattaatttacgcagtttactttt |
9719394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 297 - 461
Target Start/End: Original strand, 13585495 - 13585661
Alignment:
| Q |
297 |
aaactgagcatacacaaaaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctactgcatttcacaatgta--catcacatgct |
394 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||| |||| || ||| |||||| |||||||||||||||||| || || || ||||||| |
|
|
| T |
13585495 |
aaactcagcatacacaaaaagagaaccacccaaataaaggagaacttatttgaaaccatttttcttgctactgcatttcataacctactcaacacatgca |
13585594 |
T |
|
| Q |
395 |
gatttataatgcaaagtcgatggtggttgcttatttttcaaggcattaaattttgtagtttactttt |
461 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
13585595 |
tatttataatgcaaattcgatggtagttgcttatttttcaaggcattaatttacgcagtttactttt |
13585661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 13848550 - 13848497
Alignment:
| Q |
314 |
aaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctac |
367 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
13848550 |
aaagagaactaccaaaataagagagcacttctttgaagccatttttcttgctac |
13848497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 13864431 - 13864378
Alignment:
| Q |
314 |
aaagagaatcacccaaataagggagcacttcttagaagccatttatcttgctac |
367 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
13864431 |
aaagagaactaccaaaataagagagcacttctttgaagccatttttcttgctac |
13864378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 141 times since January 2019
Visitors: 6702