View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_26 (Length: 427)
Name: NF0914_low_26
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 156 - 398
Target Start/End: Original strand, 25330104 - 25330347
Alignment:
| Q |
156 |
gacaactatatttctttcacgtttcatcttttattaatatatgtaaaatggtcaaatgcatgataaatattatg-aaaaagagtaatcaattttatatta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| |
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| T |
25330104 |
gacaactatatttctttcacgtttcatcttttattaatatatgttaaatggtcaaatgcatggtaaatattatggaaaaaaagtaatcaattctatatta |
25330203 |
T |
|
| Q |
255 |
aaattcttaaatcacaaattatgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaacttt |
354 |
Q |
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|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
25330204 |
aaattcttaaattataaatagtgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagtagttagaaaataaatagagaatttt |
25330303 |
T |
|
| Q |
355 |
gagtaaatatgtgtttgaaattgtttgaggtgttggtttgttgt |
398 |
Q |
| |
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| |||||||| |||||| ||||||||||||| ||||| |||||| |
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| T |
25330304 |
gggtaaatatatgtttgtaattgtttgaggtattggtctgttgt |
25330347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 157 - 398
Target Start/End: Complemental strand, 24892076 - 24891834
Alignment:
| Q |
157 |
acaactatatttctttcacgtttcatcttttattaatatat--gtaaaatggtcaaatgcatgataaatattatgaaaaagagtaatcaattttatatta |
254 |
Q |
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|||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
24892076 |
acaattatatttctttcat-tttcatcttttcttaatatatatgtaaaatggtcaaatgcataataaatattatggaaaagagtaatcaattctatatta |
24891978 |
T |
|
| Q |
255 |
aaattcttaaatcacaaattatgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaacttt |
354 |
Q |
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| T |
24891977 |
aaattcttaaatcacaaatagtgaaaaacaaacaaagatgacgcattatatctgaggttgtagtacctgaaaagcagtaagaaaataaatagaaaacttt |
24891878 |
T |
|
| Q |
355 |
gagtaaatatgtgtttgaaattgtttgaggtgttggtttgttgt |
398 |
Q |
| |
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| T |
24891877 |
gagtaaatatatgtttgaaattgtttgaggtattggtctgttgt |
24891834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 25634505 - 25634650
Alignment:
| Q |
253 |
taaaattcttaaatcacaaattatgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaact |
352 |
Q |
| |
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|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25634505 |
taaaattcttaaatcacagatagtgaaaaacaaactaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagtgaact |
25634604 |
T |
|
| Q |
353 |
ttgagtaaatatgtgtttgaaattgtttgaggtgttggtttgttgt |
398 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
25634605 |
ttgagtaaatatatgtttgaaattgtttgaggtattggtttgttgt |
25634650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 166 - 385
Target Start/End: Original strand, 25379411 - 25379630
Alignment:
| Q |
166 |
tttctttcacgtttcatcttttattaatatatgtaaaatggtcaaatgcatgataaatattatgaaaaagagtaatcaattttatattaaaattcttaaa |
265 |
Q |
| |
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||||||| || | ||||||||||||||||||||||| |||||| || | | |||||||||| || ||||| ||||||||| |||||||||||||| ||| |
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| T |
25379411 |
tttcttttacttatcatcttttattaatatatgtaacatggtcgaacgaacgataaatattgtggaaaagtgtaatcaatcctatattaaaattctaaaa |
25379510 |
T |
|
| Q |
266 |
tcacaaattatgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaactttgagtaaatatg |
365 |
Q |
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|||||||| ||| |||||||| || |||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||||| |||| || | |
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| T |
25379511 |
tcacaaatagtgagaaacaaactaacatgacgcattatatatgaggttagagtacctgaaaagtagttagaaaataaatggagaacttcgagtgaagaca |
25379610 |
T |
|
| Q |
366 |
tgtttgaaattgtttgaggt |
385 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
25379611 |
tgtttgaaattgtttgaggt |
25379630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 185 - 385
Target Start/End: Original strand, 25407501 - 25407700
Alignment:
| Q |
185 |
tttattaatatatgtaaaatggtcaaatgcatgataaatattatgaaaaagagtaatcaattttatattaaaattcttaaatcacaaattatgaaaaaca |
284 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||| || ||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||| |
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| T |
25407501 |
tttattaatatatgtaaa-tggtcaaacagacgataaatattgtggaaaagtgtaatcaatcctatattaaaattctaaaatcacaaatagtgagaaaca |
25407599 |
T |
|
| Q |
285 |
aacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaactttgagtaaatatgtgtttgaaattgtttgagg |
384 |
Q |
| |
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||| || |||| ||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||| |||| || | ||||||||||||||||||| |
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| T |
25407600 |
aactaacatgatgcattatatctgaggttagagtacctgaaaagtagttagaaaataacttgagaacttcgagtgaagacatgtttgaaattgtttgagg |
25407699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 25329947 - 25330027
Alignment:
| Q |
4 |
atgtcgaagaatatgcactctaatctttaattgtaaaatctaattaata--aagtgcgttacttctaagatattatgcagc |
82 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||||||||| | ||||||||| ||||| |||||||||||| |
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| T |
25329947 |
atgtcgatgaatttgcactctaatttttaattgtaaaatctaattaataacatgtgcgttacatctaatatattatgcagc |
25330027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 24892216 - 24892152
Alignment:
| Q |
20 |
actctaatctttaattgtaaaatctaattaata--aagtgcgttacttctaagatattatgcagc |
82 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
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|
| T |
24892216 |
actctaatttttaattgtaaaatctaattaataacatgtgcattacttctaagatattatgcagc |
24892152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 25599090 - 25599138
Alignment:
| Q |
280 |
aaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaag |
328 |
Q |
| |
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||||||||||| ||| | |||||||| ||||||| |||||||||||||| |
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|
| T |
25599090 |
aaacaaacaaacatggcacattatatatgaggttagagtacctgaaaag |
25599138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 385
Target Start/End: Original strand, 10331698 - 10331917
Alignment:
| Q |
167 |
ttctttcacgtttcatcttttattaatatatgtaaaatggtcaaatgcatgataaatattatgaaaaagagtaatcaattt-tatattaaaattcttaaa |
265 |
Q |
| |
|
||||||||| | | || ||||||||||||||||||||||||||||||| || ||||||| | |||||||||| ||| | || ||| ||||||| ||| |
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| T |
10331698 |
ttctttcacttataatattttattaatatatgtaaaatggtcaaatgctcgacaaatattgtcgaaaagagtaaccaaatcctaaatttaaattctaaaa |
10331797 |
T |
|
| Q |
266 |
tcacaaattatgaaaaacaaacaaagatgacgcattatatctgaggttggagtacctgaaaagcagttagaaaataaatagagaactttgagtaaatatg |
365 |
Q |
| |
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| |||||| || |||||||| || |||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||| || |||| || | |
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|
| T |
10331798 |
ttacaaatagtgggaaacaaactaacatgacgcattatatatgaggttggagtacctgaaaagtagttagaatataaattaagaagttcgagtgaagaca |
10331897 |
T |
|
| Q |
366 |
tgtttgaaattgtttgaggt |
385 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
10331898 |
tgtttgaaattgattgaggt |
10331917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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