View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_27 (Length: 419)
Name: NF0914_low_27
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 38120767 - 38121174
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38120767 |
aagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
38120866 |
T |
|
| Q |
98 |
gacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacag |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
38120867 |
gacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagagcaggtttcttccgtggcctgaccagcagaatctgatacag |
38120966 |
T |
|
| Q |
198 |
tagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120967 |
tagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
38121066 |
T |
|
| Q |
298 |
atacacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccg |
397 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
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|
| T |
38121067 |
atacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccg |
38121166 |
T |
|
| Q |
398 |
gaagtagt |
405 |
Q |
| |
|
|||||||| |
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|
| T |
38121167 |
gaagtagt |
38121174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 38609353 - 38608949
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609353 |
aagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagac |
38609254 |
T |
|
| Q |
101 |
acacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacagtag |
200 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| ||| | |
|
|
| T |
38609253 |
acacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttg |
38609154 |
T |
|
| Q |
201 |
cagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaata |
300 |
Q |
| |
|
|||| |||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609153 |
atgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaata |
38609054 |
T |
|
| Q |
301 |
cacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccggaa |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
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|
| T |
38609053 |
cacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaa |
38608954 |
T |
|
| Q |
401 |
gtagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
38608953 |
gtagt |
38608949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 38794136 - 38793732
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38794136 |
aagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagac |
38794037 |
T |
|
| Q |
101 |
acacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacagtag |
200 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| ||| | |
|
|
| T |
38794036 |
acacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagttg |
38793937 |
T |
|
| Q |
201 |
cagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaata |
300 |
Q |
| |
|
|||| |||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793936 |
atgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaata |
38793837 |
T |
|
| Q |
301 |
cacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccggaa |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
38793836 |
cacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaa |
38793737 |
T |
|
| Q |
401 |
gtagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
38793736 |
gtagt |
38793732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 34592954 - 34592844
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
34592954 |
aagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacggga |
34592855 |
T |
|
| Q |
98 |
gacacacctgc |
108 |
Q |
| |
|
||||||||||| |
|
|
| T |
34592854 |
gacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 28730344 - 28730748
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagac |
100 |
Q |
| |
|
||||| |||| |||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
28730344 |
aagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatgggagac |
28730443 |
T |
|
| Q |
101 |
acacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacagtag |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28730444 |
acacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtag |
28730543 |
T |
|
| Q |
201 |
cagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaata |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28730544 |
cagctctggctccgacacctgctccttccgatgctccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaaata |
28730643 |
T |
|
| Q |
301 |
cacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccggaa |
400 |
Q |
| |
|
||| | |||||||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||| || ||| ||| |||||||||||||||| |
|
|
| T |
28730644 |
cacactatgcacaactatcttcacattacggatgacgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtcactcctccaccggaa |
28730743 |
T |
|
| Q |
401 |
gtagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
28730744 |
gtagt |
28730748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33078551 - 33078483
Alignment:
| Q |
1 |
aagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
66 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33078551 |
aagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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