View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_29 (Length: 397)
Name: NF0914_low_29
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 36263780 - 36263485
Alignment:
| Q |
13 |
aatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagt |
112 |
Q |
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| T |
36263780 |
aatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagt |
36263681 |
T |
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| Q |
113 |
atattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttat |
212 |
Q |
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| T |
36263680 |
atattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttat |
36263581 |
T |
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| Q |
213 |
tgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaac |
308 |
Q |
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| T |
36263580 |
tgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaac |
36263485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 36256041 - 36255909
Alignment:
| Q |
44 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaagga |
141 |
Q |
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|||||||| ||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| ||||| ||||| ||||||| |||||| |
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| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctctgaagga |
36255942 |
T |
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| Q |
142 |
----gaatatcctgaacttattgctgagatttt |
170 |
Q |
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| T |
36255941 |
gaatgaatatcctgaacttattgatgagctttt |
36255909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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