View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_3 (Length: 752)
Name: NF0914_low_3
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 98 - 714
Target Start/End: Complemental strand, 40514163 - 40513559
Alignment:
| Q |
98 |
ctaaaatgcttttacacgttcttgttcgaatattggtatttgatcagaataagaatagagtgctaattgccttagcgcgttaccatcatcgatatttgtg |
197 |
Q |
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| T |
40514163 |
ctaaaatgcttttacacgttcttgttcgaatattggtatttgaacagaataagaatagagtgctaattgccttagtgcgttaccatcatcgatatttgtg |
40514064 |
T |
|
| Q |
198 |
gccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataat |
297 |
Q |
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| T |
40514063 |
gccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataat |
40513964 |
T |
|
| Q |
298 |
ccaagacctgaaaggtgtgtgtttcctaaattccctcaaataattttcaaaattccaagttatttag--ctaattagtcttcaagtttatgaacttttca |
395 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40513963 |
ccaagatctgaaaggtgtgt--ttcctaaattccctcaaataattttcaaaattccaagttatttagtactaattagtcttcaagtttatgaacttttca |
40513866 |
T |
|
| Q |
396 |
tattatttttcataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacct |
495 |
Q |
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| T |
40513865 |
ta------------ggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacct |
40513778 |
T |
|
| Q |
496 |
gaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttn |
595 |
Q |
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| T |
40513777 |
gaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagtta |
40513678 |
T |
|
| Q |
596 |
nnnnnngagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccact |
695 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513677 |
aaaaaagagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccact |
40513578 |
T |
|
| Q |
696 |
gttcttttatttgccagtg |
714 |
Q |
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||||||||||||||||||| |
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| T |
40513577 |
gttcttttatttgccagtg |
40513559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 611 - 711
Target Start/End: Original strand, 21611600 - 21611700
Alignment:
| Q |
611 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
710 |
Q |
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|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
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| Q |
711 |
a |
711 |
Q |
| |
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| |
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| T |
21611700 |
a |
21611700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 713
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
643 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
713 |
Q |
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|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
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| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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