View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_31 (Length: 393)
Name: NF0914_low_31
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 47 - 392
Target Start/End: Complemental strand, 2179952 - 2179606
Alignment:
| Q |
47 |
atttagtaacaattttcaggtgttactgccattgagaatatgcaaaacaaaagaagtaacatcctgtcatattatgcatggaactgatgataaaataatg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2179952 |
atttagtaacaattttcaggtgttactgccattgagaatatgcaaaacaaaagaagtaacatcccgtcatattatgcatggaactgatgataaaataatg |
2179853 |
T |
|
| Q |
147 |
ttggcatgccatctggtttcgatgctgcgacctgcgaggagcttcaattgtttagccgccatagccacttcaacaactgtgaacactttctctaatattc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2179852 |
ttggcatgccatctggtttcgatgctgcgacctgcgaggagcttcaattgcttagccgccatagccacttcaacaactgtgaacactttctctaatattc |
2179753 |
T |
|
| Q |
247 |
ctttcatgggatttgtcagtctaccttgcacaataaaaatgtaagagagaattgtgttactgccatttagtactatttttctgaag-nnnnnnnngagag |
345 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2179752 |
ctttcatgggatttgtcagtttaccttgcacaataaaaatgtaagagagaattgtgttactgccatttagtactatttttctgaagaaaaaaaaagagag |
2179653 |
T |
|
| Q |
346 |
atattttgagtagatgcattgtctcatcctcctcaaattagaataat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2179652 |
atattttgagtagatgcattgtctcatcctcctcaaattagagtaat |
2179606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 347 times since January 2019
Visitors: 6696