View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_32 (Length: 391)
Name: NF0914_low_32
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 103 - 310
Target Start/End: Complemental strand, 15835858 - 15835651
Alignment:
| Q |
103 |
gtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtg |
202 |
Q |
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| T |
15835858 |
gtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtg |
15835759 |
T |
|
| Q |
203 |
ttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835758 |
ttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcatt |
15835659 |
T |
|
| Q |
303 |
cgctgcct |
310 |
Q |
| |
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|||||||| |
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| T |
15835658 |
cgctgcct |
15835651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 19796614 - 19796424
Alignment:
| Q |
109 |
gatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtg |
208 |
Q |
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|||||||| ||||||||||| || |||||||||||||| || |||||||| ||||| |||||| |||||||||||||||||||||||||||| || || | |
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| T |
19796614 |
gatactccttctgaaacactcgttgagagactcaaacttgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcg |
19796515 |
T |
|
| Q |
209 |
gtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttc |
299 |
Q |
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| T |
19796514 |
gtaccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttc |
19796424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 47713629 - 47713490
Alignment:
| Q |
146 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgc |
245 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| || ||||| |||||||| || |
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| T |
47713629 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgc |
47713530 |
T |
|
| Q |
246 |
tgctctctggttgcatgaaaatcaccctaaaaccctagct |
285 |
Q |
| |
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|||||| ||||| || | | |||||||||||||||||| |
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| T |
47713529 |
tgctctttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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