View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_33 (Length: 388)
Name: NF0914_low_33
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 23523969 - 23524335
Alignment:
| Q |
1 |
ctccttcttaaatctcgttcgatgacctttaggtatcatcagatcagcattagttctttgcaacaagttaaacatgagatttcaagcatctatgtatgag |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523969 |
ctccttcttaaaactcgtttgatgacctttaggtatcatcagatcagtattagttctttgcaacaagttaaacatgagatttcaagcatctatgtatgag |
23524068 |
T |
|
| Q |
101 |
tacactagtactatatggtgtttaattctaacacaagtttgtatagttaggttgttagctgagaaaaattaaactgtctcacacgtgtgagggaaaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23524069 |
tacactagtactatatggtgtttaattctaacacaagtttgtatagttaggttgttagctgagaaaaattaaactgtctcacacgtgtgagggaaaatgt |
23524168 |
T |
|
| Q |
201 |
aaaaggtatgaattgaatagagttaggtcatgggtgcgcatgaacaatttgtcgaatcacacgtgtggctaagtccatgatattgtctaagcaggtgggg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23524169 |
aaaaggtatgaattgaatagagttaggtcatgggtgcgcatgaacaatttgtcgaatcacacgtgtggctaagtccatgatattgtctaagcaggtgggg |
23524268 |
T |
|
| Q |
301 |
tattgagagaagtgatttttgctaattttaatggtacaatgtaatgtcatgataaggtttgatgatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23524269 |
tattgagagaagtgatttttgctaattttaatggtacaatgtaatgtcatgataaggtttgatgatg |
23524335 |
T |
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