View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0914_low_36 (Length: 376)

Name: NF0914_low_36
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0914_low_36
NF0914_low_36
[»] chr1 (11 HSPs)
chr1 (32-362)||(6217957-6218287)
chr1 (173-277)||(31983953-31984057)
chr1 (178-280)||(32679311-32679413)
chr1 (175-281)||(34878482-34878588)
chr1 (184-281)||(21686657-21686754)
chr1 (175-281)||(10776671-10776777)
chr1 (208-281)||(15836001-15836074)
chr1 (175-274)||(35484596-35484695)
chr1 (173-215)||(12634940-12634982)
chr1 (175-281)||(45789340-45789446)
chr1 (184-280)||(24012866-24012962)
[»] scaffold0445 (1 HSPs)
scaffold0445 (178-281)||(1119-1222)
[»] chr5 (9 HSPs)
chr5 (175-281)||(13007000-13007106)
chr5 (175-281)||(7035999-7036105)
chr5 (175-281)||(38597569-38597675)
chr5 (173-281)||(39567065-39567173)
chr5 (175-281)||(6012349-6012455)
chr5 (175-215)||(8985214-8985254)
chr5 (179-239)||(14664152-14664212)
chr5 (175-215)||(24230064-24230104)
chr5 (181-281)||(31391968-31392068)
[»] chr8 (8 HSPs)
chr8 (180-281)||(25191275-25191376)
chr8 (173-281)||(31013780-31013888)
chr8 (175-281)||(8980971-8981077)
chr8 (173-277)||(10377469-10377573)
chr8 (179-281)||(29617666-29617768)
chr8 (121-168)||(7172936-7172983)
chr8 (180-281)||(37971074-37971172)
chr8 (175-283)||(27110671-27110779)
[»] chr7 (12 HSPs)
chr7 (184-359)||(5078526-5078701)
chr7 (182-281)||(47590095-47590193)
chr7 (173-281)||(9450348-9450456)
chr7 (163-234)||(25067848-25067919)
chr7 (175-277)||(4529853-4529955)
chr7 (179-281)||(30757030-30757132)
chr7 (181-281)||(19404965-19405065)
chr7 (185-281)||(48061206-48061302)
chr7 (178-281)||(19296655-19296758)
chr7 (182-281)||(42978389-42978488)
chr7 (179-281)||(13797142-13797244)
chr7 (181-237)||(3224672-3224728)
[»] chr3 (15 HSPs)
chr3 (173-281)||(40487095-40487203)
chr3 (178-281)||(10232845-10232948)
chr3 (174-281)||(47895922-47896029)
chr3 (175-281)||(40556483-40556589)
chr3 (173-278)||(45568658-45568763)
chr3 (175-215)||(20988032-20988072)
chr3 (177-281)||(21290030-21290134)
chr3 (178-281)||(50194494-50194597)
chr3 (175-281)||(6954907-6955013)
chr3 (175-240)||(43488849-43488914)
chr3 (173-341)||(629056-629227)
chr3 (178-281)||(9998241-9998345)
chr3 (177-280)||(31272018-31272122)
chr3 (177-281)||(48650946-48651050)
chr3 (173-281)||(51303849-51303957)
[»] chr2 (17 HSPs)
chr2 (175-281)||(19597661-19597766)
chr2 (173-281)||(7646252-7646360)
chr2 (175-281)||(4778535-4778641)
chr2 (175-281)||(27097616-27097722)
chr2 (177-281)||(7448032-7448136)
chr2 (174-281)||(12648135-12648242)
chr2 (175-281)||(43397330-43397436)
chr2 (176-281)||(4098886-4098991)
chr2 (175-281)||(12677507-12677613)
chr2 (183-281)||(17149957-17150055)
chr2 (104-162)||(32831225-32831283)
chr2 (250-351)||(6436465-6436566)
chr2 (192-281)||(24461238-24461327)
chr2 (184-281)||(32448832-32448929)
chr2 (176-281)||(36943335-36943440)
chr2 (193-281)||(37876809-37876897)
chr2 (111-159)||(41220999-41221047)
[»] scaffold0009 (1 HSPs)
scaffold0009 (184-351)||(58220-58387)
[»] chr4 (15 HSPs)
chr4 (170-257)||(9713688-9713775)
chr4 (175-281)||(22300637-22300743)
chr4 (181-281)||(2520575-2520675)
chr4 (176-281)||(13633907-13634011)
chr4 (173-281)||(51888427-51888535)
chr4 (178-281)||(4142965-4143068)
chr4 (174-281)||(19853723-19853829)
chr4 (178-281)||(27651743-27651846)
chr4 (178-281)||(35348101-35348204)
chr4 (172-281)||(5119127-5119237)
chr4 (175-281)||(22610976-22611081)
chr4 (184-281)||(26091124-26091221)
chr4 (179-281)||(26633881-26633983)
chr4 (232-281)||(36161563-36161612)
chr4 (173-245)||(56156800-56156872)
[»] chr6 (6 HSPs)
chr6 (175-281)||(12170268-12170374)
chr6 (173-281)||(3913785-3913892)
chr6 (178-280)||(33053380-33053482)
chr6 (175-281)||(68212-68317)
chr6 (306-351)||(22571393-22571438)
chr6 (173-281)||(1523179-1523287)
[»] scaffold0127 (1 HSPs)
scaffold0127 (175-281)||(15264-15370)
[»] scaffold0026 (1 HSPs)
scaffold0026 (175-281)||(72075-72181)
[»] scaffold0603 (1 HSPs)
scaffold0603 (176-281)||(7492-7595)
[»] scaffold0492 (1 HSPs)
scaffold0492 (208-281)||(12721-12794)
[»] scaffold0064 (1 HSPs)
scaffold0064 (173-246)||(19282-19354)
[»] scaffold0088 (1 HSPs)
scaffold0088 (175-280)||(50558-50663)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 32 - 362
Target Start/End: Complemental strand, 6218287 - 6217957
Alignment:
Q  32 tatcatcgggttatttattccactaatatatactcattaattgttgtgttnnnnnnnnnnn-tatactcaataattgagtttcatcttatttaactattt 130  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||            |||||||||||||||| |||||||||||||||||||||    
T  6218287 tatcatcgggttatttattc-actaatatatactcattaattgttgtgttaaaaaaaataaatatactcaataattgaatttcatcttatttaactattt 6218189  T
Q  131 cattaactacaattaacaaaaatgttttagtatatgctttttgtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttca 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6218188 cattaactacaattaacaaaaatgttttagtatatgctttttgtcggccctaattttttagtgagggaaattccaacttctctcttaattatctttttca 6218089  T
Q  231 ttcactcatcaaggagagatgattttagtccattttttgacctagaatcacacttatgtatatttttctccactacttttgatctaattacgtgatttcc 330  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6218088 ttaactcatcaaggagagatgattttagttcattttttgacctagaatcacacttatgtatttttttctccactacttttgatctaattacgtgatttcc 6217989  T
Q  331 acacatatcaaattttttcttgtgtttttctt 362  Q
    ||||||||||||||||||||||||||||||||    
T  6217988 acacatatcaaattttttcttgtgtttttctt 6217957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 31983953 - 31984057
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| || | ||||| |  ||   ||||||||||||| || ||||||  ||||||||||||    
T  31983953 gtcggccctagatttttagtgagagaaactccaacttctctctaaactttctttcttctttgttcatcaaggagaggtggttttaggtcattttttgacc 31984052  T
Q  273 tagaa 277  Q
    |||||    
T  31984053 tagaa 31984057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 32679413 - 32679311
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||||||||||| ||||||||||||| ||||| | || ||||| || ||||||| || ||||| | || |||||   ||||||||||| |||||    
T  32679413 ccctagttttttagtgagagaaattccaacttttctctaagttttctttctctttcactcgtcgaggaggggtggttttatgtcattttttgacatagaa 32679314  T
Q  278 tca 280  Q
    |||    
T  32679313 tca 32679311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 34878588 - 34878482
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| |||||||||||| | || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||||    
T  34878588 cggccctagttttctagtgagagaaactccaacttctctttaaactttctttctctttcgttcatcgaggaggggtggttttaggtcattttttgaccta 34878489  T
Q  275 gaatcac 281  Q
    |||||||    
T  34878488 gaatcac 34878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 21686657 - 21686754
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||||||||||| |||| | |||||| | ||| |||| ||||| || |||  ||||| |||||||||||||||||  |||||||||| ||||||||||    
T  21686657 ttttttagtgagagaaactgcaacttttttctaaattttctttctctttcgttcatcgaggagagatgattttaggtcattttttgatctagaatcac 21686754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 10776777 - 10776671
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    |||| |||||||||||| ||| |||| ||||| |||||||| || | ||||| || |||| ||||| ||||  | || ||||||  ||||||||||||||    
T  10776777 cggcactagttttttagggagagaaactccaatttctctctaaactttctttctccttcattcatcgaggaagggtggttttagatcattttttgaccta 10776678  T
Q  275 gaatcac 281  Q
    |||||||    
T  10776677 gaatcac 10776671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 15836001 - 15836074
Alignment:
Q  208 ttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    ||||||||||| | ||||| || || | ||||||||||||| || ||||||  |||||||||||||||||||||    
T  15836001 ttctctcttaactttctttctctttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcac 15836074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 35484695 - 35484596
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || || |||  ||||||||||||||    
T  35484695 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttgtaggtcattttttgaccta 35484596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 12634940 - 12634982
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctct 215  Q
    ||||||||||||||||||||||| |||| || |||||||||||    
T  12634940 gtcggccctagttttttagtgagagaaactcaaacttctctct 12634982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 45789340 - 45789446
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||| ||||||||||||||| |||| || |  |||||||| |||| | ||| |  |||| ||||| ||||  |||| ||||||  ||||||||||||||    
T  45789340 cggccttagttttttagtgagagaaactctacgttctctctaaattttatttctacttcattcatcgaggattgatggttttaggtcattttttgaccta 45789439  T
Q  275 gaatcac 281  Q
    |||||||    
T  45789440 gaatcac 45789446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 24012962 - 24012866
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatca 280  Q
    |||||||||||| |||| | ||| |||| ||| | || ||||| || |||||||||| | || |||||||||||   || |||||||||||||||||    
T  24012962 ttttttagtgagagaaacttcaaattctttctaagttctctttctctttcactcatcgacgatagatgattttatgtcaatttttgacctagaatca 24012866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 1119 - 1222
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||||||||||| |||| | |||||||||||| |||| ||||| || |||  ||||| ||||||| || ||||||  |||||||||||||||||    
T  1119 ccctagttttttagtgagtgaaacttcaacttctctctaaattttctttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaa 1218  T
Q  278 tcac 281  Q
    ||||    
T  1219 tcac 1222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 13007000 - 13007106
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||||||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||||| || ||||||  ||||||||||||||    
T  13007000 cggccctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggagaggtggttttaggtcattttttgaccta 13007099  T
Q  275 gaatcac 281  Q
    |||||||    
T  13007100 gaatcac 13007106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 7035999 - 7036105
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| || ||||||||||| || | ||||| || |||| ||||||||| | | || ||||||  ||||||||||||||    
T  7035999 cggccctagttttctagtgagagaaactcaaacttctctctaaactttctttctccttcattcatcaaggtggggtggttttaggtcattttttgaccta 7036098  T
Q  275 gaatcac 281  Q
     ||||||    
T  7036099 aaatcac 7036105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 38597569 - 38597675
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||   |||||||||||||    
T  38597569 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggttattttttgaccta 38597668  T
Q  275 gaatcac 281  Q
    |||||||    
T  38597669 gaatcac 38597675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 39567065 - 39567173
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||| |||||||||||| ||||  ||  ||||||| | | || ||||  || |||||||||| ||||| | |||||||||  || |||||||||    
T  39567065 gtcggccctaattttttagtgagagaaacaccgtcttctctttaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacc 39567164  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  39567165 tagaatcac 39567173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 6012455 - 6012349
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    |||||| |||||||||||| | |||| |||||||||||||| || | ||||| || |||  ||||  ||||| | || ||||||  ||||||||||| ||    
T  6012455 cggccccagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcattgaggaggggtggttttaggtcattttttgacata 6012356  T
Q  275 gaatcac 281  Q
    |||||||    
T  6012355 gaatcac 6012349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8985254 - 8985214
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctct 215  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  8985254 cggccctagctttttagtgagagaaactccaacttctctct 8985214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 14664152 - 14664212
Alignment:
Q  179 cctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcat 239  Q
    ||||||||||||||||| |||| | || ||||||||| |||||||||| |  |||||||||    
T  14664152 cctagttttttagtgagagaaacttcatcttctctctaaattatctttctttttcactcat 14664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 24230104 - 24230064
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctct 215  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  24230104 cggccctagttttctagtgagagaaactccaacttctctct 24230064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 31392068 - 31391968
Alignment:
Q  181 tagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatca 280  Q
    ||||||| |||||||  |||||| ||||||||||| || | ||||| ||  ||  ||||| ||||| | || ||||||  ||||||||||||||||||||    
T  31392068 tagttttctagtgagaaaaattctaacttctctctaaactttctttctccatcgttcatcgaggaggggtggttttaggtcattttttgacctagaatca 31391969  T
Q  281 c 281  Q
    |    
T  31391968 c 31391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 25191376 - 25191275
Alignment:
Q  180 ctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatc 279  Q
    |||||||||||||||| |||| |||||||||||||| || | ||||| || ||   ||||| ||||||| |||||||||  |||||||||||||||||||    
T  25191376 ctagttttttagtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggagaggtgattttaggtcattttttgacctagaatc 25191277  T
Q  280 ac 281  Q
    ||    
T  25191276 ac 25191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 31013888 - 31013780
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||    
T  31013888 gtcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacc 31013789  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  31013788 tagaatcac 31013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 8980971 - 8981077
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||| ||||||||||||||| |||| |||||||||||||| | || || || |||||||||| || ||||| | || ||||||  ||||||||||||||    
T  8980971 cggccgtagttttttagtgagagaaactccaacttctctctaagttttcgttctcattcactcgtcgaggaggggtggttttaggtcattttttgaccta 8981070  T
Q  275 gaatcac 281  Q
     ||||||    
T  8981071 aaatcac 8981077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 10377469 - 10377573
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||||||| ||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||    
T  10377469 gtcggccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacc 10377568  T
Q  273 tagaa 277  Q
    |||||    
T  10377569 tagaa 10377573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 29617768 - 29617666
Alignment:
Q  179 cctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaat 278  Q
    ||||||||||||||||| |||||| |||||||||||| |||| | ||| || |||||| ||| | ||||  |  ||||||  |||||||||||||| |||    
T  29617768 cctagttttttagtgagagaaatttcaacttctctctaaattttgtttctctttcacttatcgaagagatgttgttttaggtcattttttgacctacaat 29617669  T
Q  279 cac 281  Q
    |||    
T  29617668 cac 29617666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 7172936 - 7172983
Alignment:
Q  121 ttaactatttcattaactacaattaacaaaaatgttttagtatatgct 168  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| |||||    
T  7172936 ttaactacttcattaactacaattaataaatatgttttagtaaatgct 7172983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 37971074 - 37971172
Alignment:
Q  180 ctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatc 279  Q
    |||||||| || |||| |||| |||||||||||||| |||| ||||| |  |||| ||||| |||||   || ||||||  |||||||||||||||||||    
T  37971074 ctagttttctaatgagagaaactccaacttctctctaaattttctttcttcttcattcatcgaggag---tggttttaggtcattttttgacctagaatc 37971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 27110779 - 27110671
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    |||| |||||||| ||||||| |||| |||||||||||||| || | ||||| || |||| ||||| | ||  | || ||||||  |||||||||| |||    
T  27110779 cggcgctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcattcatcgaagatgggtggttttaggtcattttttgatcta 27110680  T
Q  275 gaatcacac 283  Q
     ||||||||    
T  27110679 aaatcacac 27110671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 5078701 - 5078526
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcacac 283  Q
    |||||||||||| |||| | |||||||||||| | || ||||| || ||||||||| |||||  | |||||||||  ||||||||||||||||||||| |    
T  5078701 ttttttagtgagagaaacttcaacttctctctaagttctctttatctttcactcattaaggaagggtgattttaggtcattttttgacctagaatcaccc 5078602  T
Q  284 ttatgtatatttttctccactacttttgatctaattacgtgatttccacacatatcaaattttt-tcttgtgttttt 359  Q
     | || || ||| |||||| || ||| ||||||| || |||||||  ||| ||||||| ||||| | ||||||||||    
T  5078601 ctctgcatctttctctccatta-tttcgatctaaataagtgatttttacatatatcaagtttttcttttgtgttttt 5078526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 47590095 - 47590193
Alignment:
Q  182 agttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||| ||||||  ||||  ||||| | |||||||||  || ||||||| ||||||||||    
T  47590095 agttttttagtgagagaaattccaacttctctctaaattttctttctcattcgttcatagaggaggggtgattttaggtca-tttttgaactagaatcac 47590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 9450456 - 9450348
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||| |||| ||||||| |||| |||||||||| | | || | ||||| || |||  ||||| ||||| |||| ||||||  ||||||||||||    
T  9450456 gtcggccctaattttctagtgagagaaactccaacttctttttaaactttctttctccttcgttcatcgaggagggatggttttaggtcattttttgacc 9450357  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  9450356 tagaatcac 9450348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 25067848 - 25067919
Alignment:
Q  163 tatgctttttgtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattca 234  Q
    |||| |||||||||||||||||||||||||||| |||| |||| |||||| || | || |||||||| ||||    
T  25067848 tatgttttttgtcggccctagttttttagtgagagaaactccaccttctcactaagttttctttttctttca 25067919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 4529853 - 4529955
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| | || ||||||||| | |  ||||| || |||| ||||||| ||||| |||||||||  ||||||||||| ||    
T  4529853 cggccctagttttctagtgagagaaacttcaccttctctctaagtcttctttctccttcattcatcaaagagaggtgattttaggtcattttttgacata 4529952  T
Q  275 gaa 277  Q
    |||    
T  4529953 gaa 4529955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 30757132 - 30757030
Alignment:
Q  179 cctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaat 278  Q
    ||||||||||||||| | |||| | |||||||||||| |||| ||||| || |||  ||||| ||||| | || ||||||   |||||||||||||||||    
T  30757132 cctagttttttagtgggagaaacttcaacttctctctaaattttctttctctttcgttcatcgaggaggggtggttttaggtaattttttgacctagaat 30757033  T
Q  279 cac 281  Q
    |||    
T  30757032 cac 30757030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 19405065 - 19404965
Alignment:
Q  181 tagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatca 280  Q
    ||||||||||||||| |||| |||||||||||||| |||  ||||| || || | ||||  || || | || ||||||  ||||||||||||||||||||    
T  19405065 tagttttttagtgagagaaactccaacttctctctaaatcttctttctccttaattcattgagaaggggtggttttaggtcattttttgacctagaatca 19404966  T
Q  281 c 281  Q
    |    
T  19404965 c 19404965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 48061206 - 48061302
Alignment:
Q  185 tttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    ||||||| ||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||||| || ||||||  ||||||||||| |||||||||    
T  48061206 tttttagagagagaaactccaacttctctctaaactttctttatccttcgttcatcgaggagaggtggttttaggtcattttttgacttagaatcac 48061302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 19296655 - 19296758
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||||||||| | |||| ||||||||| |||| | || | ||| || |||  ||||| ||||| | || ||||||  |||||||||||||||||    
T  19296655 ccctagttttttagtgggagaaactccaacttccctctaatttttttttgtccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaa 19296754  T
Q  278 tcac 281  Q
    ||||    
T  19296755 tcac 19296758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 42978389 - 42978488
Alignment:
Q  182 agttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||||| ||||||| |||| || ||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  |||||||||||||||||||||    
T  42978389 agttttctagtgagagaaactctaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcac 42978488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 13797244 - 13797142
Alignment:
Q  179 cctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaat 278  Q
    ||||||||| ||||||| |||| | |||||||||| | |||| ||||| || |||  ||||| ||||  |||| ||||||  |||||||| |||||||||    
T  13797244 cctagttttctagtgagagaaacttcaacttctctttaaattttctttctcgttcgttcatcgaggatggatggttttaggtcattttttaacctagaat 13797145  T
Q  279 cac 281  Q
    |||    
T  13797144 cac 13797142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 3224728 - 3224672
Alignment:
Q  181 tagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactc 237  Q
    ||||||||||||||| ||||||||||||| | ||| |||| ||||| || |||||||    
T  3224728 tagttttttagtgagagaaattccaacttttttctaaattttctttctctttcactc 3224672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 40487095 - 40487203
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||| |||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | |||||||||  ||||||||||||    
T  40487095 gtcggccctaattttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttgacc 40487194  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  40487195 tagaatcac 40487203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 10232845 - 10232948
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||| ||||| | |||| |||||||||||||| || | ||||| || |||  ||||||||||| | || ||||||  |||||||||||||||||    
T  10232845 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcaaggaggggtggttttaggtcattttttgacctagaa 10232944  T
Q  278 tcac 281  Q
    ||||    
T  10232945 tcac 10232948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 47895922 - 47896029
Alignment:
Q  174 tcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacct 273  Q
    |||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || || |||  |||||||||||||    
T  47895922 tcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttatagatcattttttgacct 47896021  T
Q  274 agaatcac 281  Q
    ||||||||    
T  47896022 agaatcac 47896029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 40556483 - 40556589
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||| | |||| |||||||||| ||| || | ||||| ||||||  ||||| ||||| | || ||||||  ||||||||||||||    
T  40556483 cggccctagttttctagtgggagaaactccaacttctttctaaactttctttctcattcgttcatcgaggaggggtggttttaggtcattttttgaccta 40556582  T
Q  275 gaatcac 281  Q
    |||||||    
T  40556583 gaatcac 40556589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 45568763 - 45568658
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  |||||||||| |    
T  45568763 gtcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgatc 45568664  T
Q  273 tagaat 278  Q
    ||||||    
T  45568663 tagaat 45568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 20988072 - 20988032
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctct 215  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  20988072 cggccctagttttttagtgagagaaactccaacttctctct 20988032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 21290134 - 21290030
Alignment:
Q  177 gccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctaga 276  Q
    |||||| |||||||||||| |||| ||   ||||||||| | || ||||  || |||||||||  ||||||| |||||||||  || |||||||||||||    
T  21290134 gccctaattttttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatggaggagaggtgattttaggtcaatttttgacctaga 21290035  T
Q  277 atcac 281  Q
    |||||    
T  21290034 atcac 21290030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 50194597 - 50194494
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||||||||||| |||| |||||||||||||| | || || || || ||||||| || || ||   || ||||||  |||||||||||||| ||    
T  50194597 ccctagttttttagtgagagaaactccaacttctctctaagttttcgttctctttcactcgtcgagaaggagtggttttagatcattttttgacctaaaa 50194498  T
Q  278 tcac 281  Q
    ||||    
T  50194497 tcac 50194494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 6955013 - 6954907
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| |||||   |||| |||||||||||||| || | ||||| || |||  |||   ||||| | |||||||||  ||||||||||||||    
T  6955013 cggccctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcactgaggaggggtgattttaggtcattttttgaccta 6954914  T
Q  275 gaatcac 281  Q
    |||||||    
T  6954913 gaatcac 6954907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 43488914 - 43488849
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatc 240  Q
    ||||||||||||||||||||| |||| | |||||||||||| || | ||||| || |||| |||||    
T  43488914 cggccctagttttttagtgagagaaacttcaacttctctctaaactttctttctccttcattcatc 43488849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 341
Target Start/End: Complemental strand, 629227 - 629056
Alignment:
Q  173 gtcggccctagtttttt--agtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttga 270  Q
    |||||||||||||||||  |||||| |||| || ||||||||||| | || || ||  | |||||||||| ||||| | || ||||||  |||| |||||    
T  629227 gtcggccctagttttttttagtgagagaaactctaacttctctctaagttttccttccctttcactcatcgaggaggggtggttttaggtcattctttga 629128  T
Q  271 cctagaatcacacttatgtat-atttttctccactacttttgatctaattacgtgatttccacacatatcaa 341  Q
    |||| |||||  ||| || ||  ||||| ||| || |||| ||||||| || ||||||| |||| |||||||    
T  629127 cctaaaatcatccttctgcatcttttttttccccttctttcgatctaaataagtgattttcacaaatatcaa 629056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 9998241 - 9998345
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgatttta-gtccattttttgacctaga 276  Q
    |||||||||| ||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||| |||  ||||||||||||||    
T  9998241 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcatttttttgacctaga 9998340  T
Q  277 atcac 281  Q
    |||||    
T  9998341 atcac 9998345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 31272122 - 31272018
Alignment:
Q  177 gccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagag-atgattttagtccattttttgacctag 275  Q
    |||||| |||| ||||||| |||| |||||||||||||| | || |||||||| |||  ||||| ||||| |  |||||||||   ||||||| ||||||    
T  31272122 gccctaattttctagtgagagaaactccaacttctctctaagttttctttttccttcgttcatcgaggagggtgtgattttaggttattttttaacctag 31272023  T
Q  276 aatca 280  Q
    |||||    
T  31272022 aatca 31272018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 48651050 - 48650946
Alignment:
Q  177 gccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctaga 276  Q
    ||||||||||| ||||||  |||| |||||||||||||| || | ||||| ||  ||  ||||| ||||| | || ||||||  |||||||||||||| |    
T  48651050 gccctagttttctagtgaaagaaactccaacttctctctaaactttctttctccatcgttcatcgaggaggggtggttttaggtcattttttgacctaaa 48650951  T
Q  277 atcac 281  Q
    |||||    
T  48650950 atcac 48650946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 51303957 - 51303849
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||| ||||||| |||| |||| ||   ||||||||| | || ||||  || || ||||||| ||||| ||||||||||   || |||||||||    
T  51303957 gtcggccctaattttttaatgagagaaactctgtcttctctctaagttttcttcctcttttactcatcgaggagggatgattttatgtcaatttttgacc 51303858  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  51303857 tagaatcac 51303849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 19597661 - 19597766
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    |||||||||||| |||||||| |||| |||||||| ||||| | |||||||| || | |||||||||| ||| |||||||||||   || ||||||||||    
T  19597661 cggccctagtttattagtgagagaaactccaacttatctctaagttatctttctcttccactcatcaaagag-gatgattttaggttatcttttgaccta 19597759  T
Q  275 gaatcac 281  Q
    |||||||    
T  19597760 gaatcac 19597766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 7646252 - 7646360
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||||||| ||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||    
T  7646252 gtcggccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacc 7646351  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  7646352 tagaatcac 7646360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 4778535 - 4778641
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||||||||| | |||| |||||||||| ||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||||    
T  4778535 cggccctagttttttagtgggagaaactccaacttctttctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgaccta 4778634  T
Q  275 gaatcac 281  Q
    |||||||    
T  4778635 gaatcac 4778641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 27097722 - 27097616
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| |||||   |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | |||||||||  ||||||||||||||    
T  27097722 cggccctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttgaccta 27097623  T
Q  275 gaatcac 281  Q
    |||||||    
T  27097622 gaatcac 27097616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 7448032 - 7448136
Alignment:
Q  177 gccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctaga 276  Q
    ||||||||||| ||||| | |||| |||||||||||||| || | |||||||| |||  ||||| ||||| | || ||||||  ||||||||| ||||||    
T  7448032 gccctagttttctagtgggagaaactccaacttctctctaaactttctttttccttcgttcatcgaggaggggtggttttaggtcattttttgtcctaga 7448131  T
Q  277 atcac 281  Q
    |||||    
T  7448132 atcac 7448136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 12648242 - 12648135
Alignment:
Q  174 tcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacct 273  Q
    ||||||||||||||| |||||| |||| |||||||||||| | | || ||||| || || |||| |  ||||| | || ||||||  |||||||||||||    
T  12648242 tcggccctagtttttaagtgagagaaactccaacttctctttaagttttctttctcttttactcgttgaggaggggtggttttaggtcattttttgacct 12648143  T
Q  274 agaatcac 281  Q
    ||||||||    
T  12648142 agaatcac 12648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 43397436 - 43397330
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| |||||||||||| | || | |||||||  |||  ||||| || || | || ||||||  ||||||||||||||    
T  43397436 cggccctagttttctagtgagagaaactccaacttctctttaaactttcttttttcttcgttcatcgagaaggggtggttttaggtcattttttgaccta 43397337  T
Q  275 gaatcac 281  Q
    |||||||    
T  43397336 gaatcac 43397330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 4098886 - 4098991
Alignment:
Q  176 ggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctag 275  Q
    |||||||||||||||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||  | ||  |||||  |||||||||||||||    
T  4098886 ggccctagttttttagtgggagaaactccaacttctctctaaactttctttctctttccttcatcgaggaagggtggctttaggtcattttttgacctag 4098985  T
Q  276 aatcac 281  Q
    ||||||    
T  4098986 aatcac 4098991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 12677613 - 12677507
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || ||   ||||| ||||| | |  ||| ||  ||||||||||||||    
T  12677613 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggaggggtagtttaaggtcattttttgaccta 12677514  T
Q  275 gaatcac 281  Q
    |||||||    
T  12677513 gaatcac 12677507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 17149957 - 17150055
Alignment:
Q  183 gttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||||||| |||| |||| | || ||||||||| | || | ||| || |||| ||||| || |||||| |||||| | |||||||||||||||||||||    
T  17149957 gttttttaatgagagaaacttcaccttctctctaagttttatttctccttcattcatcgagaagagattattttaattcattttttgacctagaatcac 17150055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 32831283 - 32831225
Alignment:
Q  104 attgagtttcatcttatttaactatttcattaactacaattaacaaaaatgttttagta 162  Q
    ||||| |||||||| ||||||||| | || ||||||||||||| ||| |||||||||||    
T  32831283 attgaatttcatctcatttaactactccaataactacaattaataaagatgttttagta 32831225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 6436465 - 6436566
Alignment:
Q  250 tgattttagtccattttttgacctagaatcacacttatgtatatttttctccactacttttgatctaattacgtgatttccacacatatcaaattttttc 349  Q
    |||||||||  ||||||||||| ||||||||| | | || | |||||||  || | |||| ||||||| || ||||||| ||||||||| || |||||||    
T  6436465 tgattttaggtcattttttgacatagaatcacccctctgcacatttttcctcatttctttcgatctaaataagtgattttcacacatataaagttttttc 6436564  T
Q  350 tt 351  Q
    ||    
T  6436565 tt 6436566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 24461238 - 24461327
Alignment:
Q  192 tgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||| |||| |||||||||||||| | || |  || || ||||||||| |||||| | || ||||||  |||||||||||||||||||||    
T  24461238 tgagtgaaactccaacttctctctaagtttttattctctttcactcattaaggaggggtggttttaggtcattttttgacctagaatcac 24461327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 32448929 - 32448832
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    |||||||||||| |||| || ||||||||| | |||| |  ||||| |||||||||| ||||| | || ||||||  |||| ||||||||| ||||||    
T  32448929 ttttttagtgagagaaactctaacttctctttaaatttttcttttctttcactcatcgaggaggggtggttttaggtcattatttgacctaaaatcac 32448832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 36943440 - 36943335
Alignment:
Q  176 ggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctag 275  Q
    |||||||||||| ||||||| |||| ||||| || ||||| || | ||||| || |||  | ||| ||||| | || ||||||  |||||||||||||||    
T  36943440 ggccctagttttctagtgagagaaactccaatttatctctaaactttctttctccttcgttgatcgaggaggggtggttttaggtcattttttgacctag 36943341  T
Q  276 aatcac 281  Q
    ||||||    
T  36943340 aatcac 36943335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 37876897 - 37876809
Alignment:
Q  193 gagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    ||||||||||||||||||||||| || | ||||| |  |||  ||||| ||||| | || ||||||  || ||||||||||||||||||    
T  37876897 gagggaaattccaacttctctctaaactttctttcttcttcgttcatcgaggaggggtggttttaggtcaatttttgacctagaatcac 37876809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 41221047 - 41220999
Alignment:
Q  111 ttcatcttatttaactatttcattaactacaattaacaaaaatgtttta 159  Q
    ||||||| | ||||||| |||||||||||||||||| |||||| |||||    
T  41221047 ttcatctgacttaactacttcattaactacaattaataaaaatatttta 41220999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 351
Target Start/End: Complemental strand, 58387 - 58220
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcacac 283  Q
    |||||||||||| |||| |||||||||||||| | || || ||||| ||||||| || ||||| | || ||||||  |||||||||||||| |||||| |    
T  58387 ttttttagtgagagaaactccaacttctctctaagttttcgttttctttcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcaccc 58288  T
Q  284 ttatgtatatttttctccactacttttgatctaattacgtgatttccacacatatcaaattttttctt 351  Q
     | || ||  |||| |||  | ||||  |||||| || |||||||||||| ||||||| | |||||||    
T  58287 ctctgcatccttttttccttttctttcaatctaaataagtgatttccacatatatcaagtgttttctt 58220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 9713688 - 9713775
Alignment:
Q  170 tttgtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgatttta 257  Q
    |||||||||||||||||||||||||| |||| || | ||||||||| | || ||||| || |||||||||| ||||| | ||||||||    
T  9713688 tttgtcggccctagttttttagtgagagaaactctaccttctctctaagttctctttctctttcactcatcgaggaggggtgatttta 9713775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 22300637 - 22300743
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||||||| ||| |||| |||||||||||||| |||| | ||| || ||||||| || |||||   || ||||||  ||||||||||||||    
T  22300637 cggccctagttttttagagagagaaactccaacttctctctaaattttatttctctttcactcgtcgaggaggagtggttttaggtcattttttgaccta 22300736  T
Q  275 gaatcac 281  Q
     ||||||    
T  22300737 aaatcac 22300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 2520575 - 2520675
Alignment:
Q  181 tagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatca 280  Q
    ||||||| ||||||| |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||||||||||    
T  2520575 tagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatca 2520674  T
Q  281 c 281  Q
    |    
T  2520675 c 2520675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 13633907 - 13634011
Alignment:
Q  176 ggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctag 275  Q
    |||||||||||| ||||||| |||| |||||||||||||| || | ||||| || ||| |||||| ||||| | || ||||||  || |||||||| |||    
T  13633907 ggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgctcatcgaggagtggtggttttaggtca-tttttgacatag 13634005  T
Q  276 aatcac 281  Q
    ||||||    
T  13634006 aatcac 13634011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 51888535 - 51888427
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||||||||||| |||| |||| | |||||| |||||   || ||||| || |||||||||| ||||| | || ||||||  |||||||||||     
T  51888535 gtcggccctagttttttattgagagaaacttcaacttttctctacgttttctttctctttcactcatcgaggaggggtggttttaggtcattttttgaca 51888436  T
Q  273 tagaatcac 281  Q
    | |||||||    
T  51888435 ttgaatcac 51888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 4143068 - 4142965
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||||||||| | |||| |||||||||||| | || | ||||| || ||   ||||| ||||| | || ||||||  |||||||||||||||||    
T  4143068 ccctagttttttagtgggagaaactccaacttctctataaactttctttctcctttgttcatcgaggaggggtggttttaggtcattttttgacctagaa 4142969  T
Q  278 tcac 281  Q
    ||||    
T  4142968 tcac 4142965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 19853829 - 19853723
Alignment:
Q  174 tcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacct 273  Q
    |||||||||||||| ||||| | |||| |||||||||||||| || | |||||  | |||| ||||| ||||| | || ||||||  || ||||||||||    
T  19853829 tcggccctagttttctagtgggagaaactccaacttctctctaaactttctttccccttcattcatcgaggaggggtggttttaggtca-tttttgacct 19853731  T
Q  274 agaatcac 281  Q
    ||||||||    
T  19853730 agaatcac 19853723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 27651743 - 27651846
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    ||||| |||||||||||| |||||||   ||||||||| |||| ||||  || |||||||||| ||||| | |||| ||||  || |||||||||||| |    
T  27651743 ccctaattttttagtgagagaaattctgtcttctctctaaattttcttcctctttcactcatcgaggaggggtgatgttaggtcaatttttgacctagga 27651842  T
Q  278 tcac 281  Q
    ||||    
T  27651843 tcac 27651846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 35348101 - 35348204
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||| ||||||  |||| |||||||||||| | || | | ||| || ||| ||||||  |||| | |||||||||  |||||||||||||||||    
T  35348101 ccctagttttctagtgaaagaaactccaacttctctttaaactttttttctccttcgctcatcgtggaggggtgattttaggtcattttttgacctagaa 35348200  T
Q  278 tcac 281  Q
    ||||    
T  35348201 tcac 35348204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 5119127 - 5119237
Alignment:
Q  172 tgtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgatttta-gtccattttttga 270  Q
    |||||||||||||||| |||||||  ||||| |||||||| ||| || | | ||| || |||| ||||||||||| | || ||||| |||  |||||| |    
T  5119127 tgtcggccctagttttctagtgagataaatttcaacttctttctaaactttatttctccttcattcatcaaggaggggtggttttatgtcatttttttta 5119226  T
Q  271 cctagaatcac 281  Q
    |||||||||||    
T  5119227 cctagaatcac 5119237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 22610976 - 22611081
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||||||||| | |||| |||||||||||||| || | ||||| || |||  || || ||||| | || ||||||  || |||||||||||    
T  22610976 cggccctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcgtcgaggaggggtggttttaggtca-tttttgaccta 22611074  T
Q  275 gaatcac 281  Q
    |||||||    
T  22611075 gaatcac 22611081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 26091221 - 26091124
Alignment:
Q  184 ttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaagga-gagatgattttagtccattttttgacctagaatcac 281  Q
    |||||||||||| |||| |||||||||||||| ||   ||||| || |||| ||||| |||| ||| |||||||||   ||||||||||||||||||||    
T  26091221 ttttttagtgagagaaactccaacttctctctaaaccttctttctccttcattcatcgaggatgag-tgattttaggttattttttgacctagaatcac 26091124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 26633983 - 26633881
Alignment:
Q  179 cctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaat 278  Q
    ||||||||||||||||| |||| |||||||||||||| || | ||||| |  |||  ||||  ||||| | || | ||||  ||||||||||||||||||    
T  26633983 cctagttttttagtgagagaaactccaacttctctctaaactttctttcttcttcgttcattgaggaggggtggtcttaggtcattttttgacctagaat 26633884  T
Q  279 cac 281  Q
    |||    
T  26633883 cac 26633881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 36161563 - 36161612
Alignment:
Q  232 tcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    ||||||||| ||||||| || ||||||  |||||||||||||||||||||    
T  36161563 tcactcatcgaggagaggtggttttaggtcattttttgacctagaatcac 36161612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 56156872 - 56156800
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaagga 245  Q
    ||||| |||||||||||| |||| |||| |||||||||||||| || | ||||| | ||||  ||||||||||    
T  56156872 gtcggtcctagttttttattgagagaaactccaacttctctctaaactttctttcttattcgttcatcaagga 56156800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 12170268 - 12170374
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| ||||||||||||||  | | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||||    
T  12170268 cggccctagttttctagtgagagaaactccaacttctctctagactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgaccta 12170367  T
Q  275 gaatcac 281  Q
    |||||||    
T  12170368 gaatcac 12170374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 3913892 - 3913785
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    ||||||||||||||| ||||||| |||| |||||||||||||| || | ||||| || ||   ||||| ||||| | || ||||||  ||||||||||||    
T  3913892 gtcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggag-ggtggttttaggtcattttttgacc 3913794  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  3913793 tagaatcac 3913785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 33053482 - 33053380
Alignment:
Q  178 ccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaa 277  Q
    |||||||||| ||||| | |||| |||||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  |||||||||||||||||    
T  33053482 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaa 33053383  T
Q  278 tca 280  Q
    |||    
T  33053382 tca 33053380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 68317 - 68212
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||||||||  | |||| |||||||||||||| || | ||||| || |||  ||||| ||||| |||| ||||||   | |||||||||||    
T  68317 cggccctagttttttagtaggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggagggatggttttag-gtaatttttgaccta 68219  T
Q  275 gaatcac 281  Q
    |||||||    
T  68218 gaatcac 68212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 22571393 - 22571438
Alignment:
Q  306 cttttgatctaattacgtgatttccacacatatcaaattttttctt 351  Q
    |||||||||||| || |||||||||||| ||||||| |||||||||    
T  22571393 cttttgatctaaataagtgatttccacatatatcaagttttttctt 22571438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 1523179 - 1523287
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacc 272  Q
    |||||||||| |||| ||||||| |||| || |  |||||||| | || | ||| || ||||| ||| |||||| | |||||||||  || |||||||||    
T  1523179 gtcggccctaattttatagtgagagaaactctacattctctctaagttttatttctctttcacacatgaaggaggggtgattttaggtcaatttttgacc 1523278  T
Q  273 tagaatcac 281  Q
    |||||||||    
T  1523279 tagaatcac 1523287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 15264 - 15370
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||||| |||| | |||||||||||| || | ||||| || |||  || || ||||| | || ||||||  ||||||||||||||    
T  15264 cggccctagttttctagtgagagaaacttcaacttctctctaaactttctttctccttcgttcttcgaggaggggtggttttaggtcattttttgaccta 15363  T
Q  275 gaatcac 281  Q
    |||||||    
T  15364 gaatcac 15370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 72181 - 72075
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||| | |||| | |||||||||||| || | ||||| || |||  ||||| ||||| | || ||||||  ||||||||||||||    
T  72181 cggccctagttttctagtgggagaaacttcaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgaccta 72082  T
Q  275 gaatcac 281  Q
    |||||||    
T  72081 gaatcac 72075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 7492 - 7595
Alignment:
Q  176 ggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctag 275  Q
    ||||||||||||| ||||||||||| |||  ||||||||| | || ||||| || || | ||||| ||||| |||| ||||||  |||||||||||||||    
T  7492 ggccctagttttt-agtgagggaaactccg-cttctctctaagttttctttctcctttattcatcgaggagggatggttttaggtcattttttgacctag 7589  T
Q  276 aatcac 281  Q
    ||||||    
T  7590 aatcac 7595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 12721 - 12794
Alignment:
Q  208 ttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgacctagaatcac 281  Q
    ||||||||||| | ||||| || || | ||||||||||||| || ||||||  |||||||||||||||||||||    
T  12721 ttctctcttaactttctttctctttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcac 12794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 19354 - 19282
Alignment:
Q  173 gtcggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggag 246  Q
    ||||| |||| |||||||||||| |||| ||||||||||||| ||||| ||||| || |||||||||| |||||    
T  19354 gtcggacctaattttttagtgagagaaactccaacttctctc-taattttctttctctttcactcatcgaggag 19282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 50558 - 50663
Alignment:
Q  175 cggccctagttttttagtgagggaaattccaacttctctcttaattatctttttcattcactcatcaaggagagatgattttagtccattttttgaccta 274  Q
    ||||||||||||| ||||| | |||| |||||||||| ||| || | ||||| || |||  ||||  ||||| | |||||||||  || |||||||||||    
T  50558 cggccctagttttctagtgggagaaactccaacttctttctaaactttctttctccttcgttcattgaggaggggtgattttaggtcactttttgaccta 50657  T
Q  275 gaatca 280  Q
    ||||||    
T  50658 gaatca 50663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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