View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_41 (Length: 357)
Name: NF0914_low_41
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 10163427 - 10163114
Alignment:
| Q |
14 |
atatagtttatgtcaaatttcaatcaagtttgtgcggtgtttagggtcaaatatgtaaaaatcttgatcctaataactccaggaatgtttttgaaattat |
113 |
Q |
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| T |
10163427 |
atatagtttatgtcaaatttcaattaagtttgtgtggtgtttagggtcaaatatgtaaaaatcttgatcctaataactccaggaatgtttttgaaattat |
10163328 |
T |
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| Q |
114 |
ttcaattgaatgagtgaatacgtaactggtgattactttttctcagttcgttaaaattttgcatttgtatgaatcaatgctatgaaatgcaaactttcta |
213 |
Q |
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| T |
10163327 |
ttcaattgaatgagtgaatacgtaactggtgattacttttactcagtttgttaaaattttgcatttgtatgaatccatgctatgaaatgcgaactttcta |
10163228 |
T |
|
| Q |
214 |
attagttaatgttttgtataatcagggactgtgcatcacagatacatgtttacacatctatatttgtccctattcagaatggtcatcctttagatgaaga |
313 |
Q |
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| T |
10163227 |
attagttaatgttttgtataatcagggactgtgcatcacagatacttgtttacacatctatatttgtccttattcagaatggtcatcctttagatgaaga |
10163128 |
T |
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| Q |
314 |
actacagttaactt |
327 |
Q |
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|||||||||||||| |
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| T |
10163127 |
actacagttaactt |
10163114 |
T |
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