View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_42 (Length: 351)
Name: NF0914_low_42
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 1477622 - 1477354
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatatggttcacagtactttgttgtataaaaggaaaaggctgaagtgaagagtgtttgtt |
173 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1477622 |
ccctctgagccttgcgaatttcagatacactcaccatcttgatatggttcacagtactttgttgtataaaaggaaaaggctgaagtgaagagtgtttgtt |
1477523 |
T |
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| Q |
174 |
gtggtggaaataatatatttggggtgagatggttttatatgaagggaaatagtgaacattggaggagggtaggtagctgaatatcacgtgcttcactctc |
273 |
Q |
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| T |
1477522 |
gtggtggaaataatatatttggggtgagatggttttatatgaagggaaatagtgaacattggaggagggtaggtagctgaacatcacgtgcttcactctc |
1477423 |
T |
|
| Q |
274 |
aaacacttgtttcattttatatatttttt----cacaactttggtcttaataataaataaatactatat |
338 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1477422 |
aaacacttgtttcattttatatattttttcaaacacaactttggtcttaataataaataaatactatat |
1477354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 1481733 - 1481693
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttg |
114 |
Q |
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| T |
1481733 |
ccctttgagccttgcgaatttcagatacactcaccatcttg |
1481693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 1491623 - 1491583
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttg |
114 |
Q |
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| T |
1491623 |
ccctttgagccttgcgaatttcagatacactcaccatcttg |
1491583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 1504382 - 1504347
Alignment:
| Q |
79 |
tgagccttgcgaatttcagatacactcaccatcttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1504382 |
tgagccttgcgaatttcagatacactcaccatcttg |
1504347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 5290231 - 5290275
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatat |
118 |
Q |
| |
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|||||||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
5290231 |
ccctttgagctttacgaatttcagacacactcaccattttgatat |
5290275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 5302084 - 5302040
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatat |
118 |
Q |
| |
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|||||||||| || ||||||||||| ||||||||||| ||||||| |
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|
| T |
5302084 |
ccctttgagctttacgaatttcagacacactcaccattttgatat |
5302040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 44128201 - 44128157
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatat |
118 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| ||||||| |
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|
| T |
44128201 |
ccctttgagcattgcgaatttcagacacactaaccatattgatat |
44128157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 44132406 - 44132362
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatat |
118 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| ||||||| |
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| T |
44132406 |
ccctttgagcattgcgaatttcagacacactaaccatattgatat |
44132362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 44140828 - 44140784
Alignment:
| Q |
74 |
ccctttgagccttgcgaatttcagatacactcaccatcttgatat |
118 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| ||||||| |
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|
| T |
44140828 |
ccctttgagcattgcgaatttcagacacactaaccatattgatat |
44140784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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