View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_43 (Length: 350)
Name: NF0914_low_43
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_43 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 99 - 350
Target Start/End: Original strand, 38608689 - 38608940
Alignment:
| Q |
99 |
atgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608689 |
atgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
38608788 |
T |
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| Q |
199 |
cgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatctt |
298 |
Q |
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|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
38608789 |
cgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatctt |
38608888 |
T |
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| Q |
299 |
gaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgc |
350 |
Q |
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| T |
38608889 |
gagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgc |
38608940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 99 - 350
Target Start/End: Original strand, 38793472 - 38793723
Alignment:
| Q |
99 |
atgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793472 |
atgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
38793571 |
T |
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| Q |
199 |
cgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatctt |
298 |
Q |
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| T |
38793572 |
cgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatctt |
38793671 |
T |
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| Q |
299 |
gaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgc |
350 |
Q |
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| T |
38793672 |
gagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgc |
38793723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 110 - 350
Target Start/End: Complemental strand, 38121423 - 38121183
Alignment:
| Q |
110 |
aggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
38121423 |
aggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatg |
38121324 |
T |
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| Q |
210 |
atctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttcc |
309 |
Q |
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| T |
38121323 |
atctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttcc |
38121224 |
T |
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| Q |
310 |
agttggaactgctctgcctacattggagcgaggtcagccgc |
350 |
Q |
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| T |
38121223 |
ggttggaactgctctgcctacattggagcgaggtcagccgc |
38121183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 106 - 350
Target Start/End: Complemental strand, 28731001 - 28730757
Alignment:
| Q |
106 |
gctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28731001 |
gctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgtt |
28730902 |
T |
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| Q |
206 |
gatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagc |
305 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||| |
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| T |
28730901 |
gatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagc |
28730802 |
T |
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| Q |
306 |
ttccagttggaactgctctgcctacattggagcgaggtcagccgc |
350 |
Q |
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| T |
28730801 |
ttccagttggaactgctctgcctacattggagcgaggtcagccgc |
28730757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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