View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_48 (Length: 325)
Name: NF0914_low_48
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 122 - 293
Target Start/End: Complemental strand, 20854803 - 20854632
Alignment:
| Q |
122 |
ttaagtagcttcgtgattataagttcatcttttttaaagtgaatagatgaagtgtttgaaattcaaacatgatacttgcatatataatgtaatttctacc |
221 |
Q |
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| T |
20854803 |
ttaagtagctttgtgattataaattcatcttttttaaagtgaatagatgaaatgtttgaaattcaaacctgatacttgcatatattatgtaatttctacc |
20854704 |
T |
|
| Q |
222 |
aattaatttaaacgtgcaataatttacatattgtttttcatttggcacctaaagaagaagtatggtgtatat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20854703 |
aattaatttaaacgtgcaataatttacatattgtttttcatttggcacctaaagaagaagtatggtgtatat |
20854632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 122 - 293
Target Start/End: Complemental strand, 41002463 - 41002288
Alignment:
| Q |
122 |
ttaagtagcttcgtgattataagttcatcttttttaaagtgaatagatgaagtgtttgaaattcaaacatgatacttgcatatataat----gtaatttc |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
41002463 |
ttaagtagcttcgtgattataaattcatcttttttaaagtgaatagataaagtgtttgaaattcaaatctgatacttgcatatattatttatgtaatttc |
41002364 |
T |
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| Q |
218 |
taccaattaatttaaacgtgcaataatttacatattgtttttcatttggcacctaaagaagaagtatggtgtatat |
293 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41002363 |
taccaattattttaaacgtgcaataatttacatattgtttttcatttggcacctaaagaagaagtatggtgtatat |
41002288 |
T |
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