View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_5 (Length: 668)
Name: NF0914_low_5
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 98 - 656
Target Start/End: Complemental strand, 40514163 - 40513617
Alignment:
| Q |
98 |
ctaaaatgcttttacacgttcttgttcgaatattggtatttgatcagaataagaatagagtgctaattgccttagcgcgttaccatcatcgatatttgtg |
197 |
Q |
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| T |
40514163 |
ctaaaatgcttttacacgttcttgttcgaatattggtatttgaacagaataagaatagagtgctaattgccttagtgcgttaccatcatcgatatttgtg |
40514064 |
T |
|
| Q |
198 |
gccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataat |
297 |
Q |
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| T |
40514063 |
gccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataat |
40513964 |
T |
|
| Q |
298 |
ccaagacctgaaaggtgtgtgtttcctaaattccctcaaataattttcaaaattccaagttatttag--ctaattagtcttcaagtttatgaacttttca |
395 |
Q |
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| T |
40513963 |
ccaagatctgaaaggt--gtgtttcctaaattccctcaaataattttcaaaattccaagttatttagtactaattagtcttcaagtttatgaac------ |
40513872 |
T |
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| Q |
396 |
tattatttttcataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacct |
495 |
Q |
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| T |
40513871 |
------ttttcataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacct |
40513778 |
T |
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| Q |
496 |
gaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttn |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513777 |
gaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagtta |
40513678 |
T |
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| Q |
596 |
nnnnnngagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatt |
656 |
Q |
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| T |
40513677 |
aaaaaagagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatt |
40513617 |
T |
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