View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_59 (Length: 283)
Name: NF0914_low_59
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 41690378 - 41690115
Alignment:
| Q |
1 |
gttcataagggacaaaccataccattatatcagcgttcccgaatttgtaactcacttcaacaattatagcattggacaacagctttctgaagagctaggt |
100 |
Q |
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| T |
41690378 |
gttcataagggacaaaacataccattatatcagcgttcccgagtttgtaactcacttcaacaattatagcattggacaacagctttctgaagagctaggt |
41690279 |
T |
|
| Q |
101 |
gttccttatgaccgtgcgaaaactcatcctgctgcattggttaaggataaatttggaatctcaaaactagaactcttcaaggcatgttttgcaagagagt |
200 |
Q |
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| T |
41690278 |
gttccttatgaccgtgcgaaaactcatcctgctgcattggttaaggataaatttggaatctcaaaactagaactcttcaaggcatgttttgcaagagagt |
41690179 |
T |
|
| Q |
201 |
ggctactaacaaagcgtagcgcttttatatacatatttaagactactcagatcatgatgatgtc |
264 |
Q |
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| T |
41690178 |
ggctactgacaaagcgtagcgcttttatatatatatttaagactactcagatcatgatcatgtc |
41690115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 19539689 - 19539810
Alignment:
| Q |
123 |
ctcatcctgctgcattggttaaggataaatttggaatctcaaaactagaactcttcaaggcatgttttgcaagagagtggctactaacaaagcgtagcgc |
222 |
Q |
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|||||| ||||||||| || ||||| || ||||||||||| ||| ||||||||||||||||| ||| ||||||| |||||| | | ||||| ||| |
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| T |
19539689 |
ctcatcatgctgcattagtaaaggaaaagtttggaatctccaaatgggaactcttcaaggcatgcttttcaagagaatggctattcatgaagcgcagcta |
19539788 |
T |
|
| Q |
223 |
ttttatatacatatttaagact |
244 |
Q |
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|||| |||| |||||||||||| |
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| T |
19539789 |
ttttgtatatatatttaagact |
19539810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 22318402 - 22318438
Alignment:
| Q |
222 |
cttttatatacatatttaagactactcagatcatgat |
258 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
22318402 |
cttttatatacatatttaagactactcagataatgat |
22318438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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