View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_6 (Length: 645)
Name: NF0914_low_6
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 80 - 617
Target Start/End: Complemental strand, 45521475 - 45520938
Alignment:
| Q |
80 |
atggacatcatcattgttattatcatctatggaagagtctaccaacacaaccttatgatcattgttgttcaacaaatctttgactttgtcatagtaacat |
179 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45521475 |
atggacatgatcattgttattatcatctatggaagagtctaccaacacaaccttatgatcattgttgttcaacaaatctttgactttgtcatagtaacat |
45521376 |
T |
|
| Q |
180 |
tgttgtgttatgataagcttggtgttggaggatattgcttgctttccaatctcagcagccgtgaagaaaggattggcggcagtggctacagcgccgagat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45521375 |
tgttgtgttatgataagcttggtgttggaggattttgcttgctttccaatctcagaagccgtgaagaaaggattggctgcagtggctacagcgccgagat |
45521276 |
T |
|
| Q |
280 |
aagaagcaccaagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgttggagtcccaatttgtgaagaccagaggc |
379 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45521275 |
aagaagcagcaagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgttggagtcccaatttgtgaagaccagaggc |
45521176 |
T |
|
| Q |
380 |
aactttacgggaggtgagttggacgtcgtggtaggtgtagacctttccagtgggggcattgatgagacatggacgtgaaccgaattgggagagattttca |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45521175 |
aactttacgggaggtgagttggacgtcgtggtaggtgtagacctttccggtgggggcattgatgagacatggacgtgaaccgaattgggagagattttca |
45521076 |
T |
|
| Q |
480 |
aaacaatatgaatgaagcggtagatgttttgggatgtatatgtctggtagtttcgacttgaatattatttcctttgtttcttgtttagatgatgccattt |
579 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45521075 |
aaacaatatgaatgaagcggtagatggtttgggatgtatatgtctggtagtttcgacttgaatattatttcctttgtttcttgtttagatgatgccattt |
45520976 |
T |
|
| Q |
580 |
aattgaatgatcaatgaagaagaagaagatgtgaaatt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45520975 |
aattgaatgatcaatgaagaagaagaagatgtgaaatt |
45520938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 152 - 517
Target Start/End: Complemental strand, 350130 - 349765
Alignment:
| Q |
152 |
caaatctttgactttgtcatagtaacattgttgtgttatgataagcttggtgttggaggatattgcttgctttccaatctcagcagccgtgaagaaagga |
251 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||| | | ||| || ||||| | | ||||||| || |||||||||| | |||||||| ||| |
|
|
| T |
350130 |
caaatccttaactttgtcatagtaacaagcttgtgttacaagcaacttagtattggaagcttttgcttgtttagcaatctcagctgaagtgaagaaggga |
350031 |
T |
|
| Q |
252 |
ttggcggcagtggctacagcgccgagataagaagcaccaagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgtt |
351 |
Q |
| |
|
||||||||||| || |||||| || |||||||||| ||||||| ||| || ||||| ||| |||| || || || | ||||||||| || || |||| |
|
|
| T |
350030 |
ttggcggcagtcattatggcgccgcgaaaagaagcaccgagaaaggcgaacacaaattccgggcaattagggagaagaaccatgatgacatccccctgtt |
349931 |
T |
|
| Q |
352 |
ggagtcccaatttgtgaagaccagaggcaactttacgggaggtgagttggacgtcgtggtaggtgtagacctttccagtgggggcattgatgagacatgg |
451 |
Q |
| |
|
||| || | ||||| ||||| ||||| ||||| | | |||||||||||| || | ||||||||| | | |||| || ||||||||||| || || |
|
|
| T |
349930 |
ggatgccaagtttgttgagaccggaggcgactttttgcgcggtgagttggacatcatagtaggtgtaaatttcagcagttggagcattgatgaggcaagg |
349831 |
T |
|
| Q |
452 |
acgtgaaccgaattgggagagattttcaaaacaatatgaatgaagcggtagatgttttgggatgta |
517 |
Q |
| |
|
||||||||| ||| || ||||||||||| |||||||||||||| || || ||||| || ||||| |
|
|
| T |
349830 |
acgtgaaccatattttgatagattttcaaagcaatatgaatgaagaggaaggtgtttgggaatgta |
349765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 329 times since January 2019
Visitors: 6696