View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0914_low_61 (Length: 277)

Name: NF0914_low_61
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0914_low_61
NF0914_low_61
[»] chr2 (5 HSPs)
chr2 (41-227)||(33662479-33662664)
chr2 (153-227)||(33662407-33662481)
chr2 (28-75)||(29407890-29407937)
chr2 (181-219)||(33662346-33662384)
chr2 (30-75)||(40156424-40156469)
[»] chr1 (12 HSPs)
chr1 (78-227)||(20014610-20014760)
chr1 (153-227)||(20014331-20014405)
chr1 (100-219)||(6671776-6671890)
chr1 (162-222)||(20014267-20014328)
chr1 (29-75)||(7820151-7820197)
chr1 (25-61)||(28456738-28456774)
chr1 (28-75)||(13761047-13761094)
chr1 (30-75)||(26770556-26770601)
chr1 (26-74)||(13147517-13147565)
chr1 (29-61)||(23442295-23442327)
chr1 (29-73)||(27649277-27649321)
chr1 (29-61)||(28456474-28456506)
[»] chr3 (12 HSPs)
chr3 (181-222)||(6524651-6524692)
chr3 (180-221)||(44364934-44364975)
chr3 (160-227)||(6524720-6524787)
chr3 (162-218)||(6524790-6524847)
chr3 (29-75)||(19341068-19341114)
chr3 (97-147)||(6524598-6524648)
chr3 (29-75)||(55176351-55176397)
chr3 (29-73)||(6144303-6144347)
chr3 (38-74)||(6525322-6525358)
chr3 (29-73)||(21343499-21343543)
chr3 (29-61)||(42148316-42148348)
chr3 (29-61)||(52514312-52514344)
[»] chr7 (5 HSPs)
chr7 (119-190)||(8179563-8179635)
chr7 (29-75)||(38857127-38857173)
chr7 (29-74)||(29097221-29097266)
chr7 (25-73)||(26833479-26833527)
chr7 (30-82)||(29112398-29112450)
[»] chr4 (4 HSPs)
chr4 (28-74)||(11565889-11565935)
chr4 (29-75)||(32538328-32538374)
chr4 (30-75)||(18884507-18884552)
chr4 (30-75)||(26791674-26791719)
[»] chr5 (3 HSPs)
chr5 (15-88)||(30966634-30966706)
chr5 (28-75)||(30192515-30192562)
chr5 (28-75)||(35671105-35671152)
[»] chr8 (6 HSPs)
chr8 (29-75)||(4174107-4174153)
chr8 (29-63)||(42732795-42732829)
chr8 (38-75)||(36313966-36314003)
chr8 (25-61)||(23512781-23512817)
chr8 (29-61)||(43519926-43519958)
chr8 (33-61)||(44886817-44886845)
[»] scaffold0283 (1 HSPs)
scaffold0283 (33-61)||(556-584)
[»] scaffold0019 (1 HSPs)
scaffold0019 (25-61)||(134331-134367)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 33662664 - 33662479
Alignment:
Q  41 gttaactatcgagaaaaactttgacagttaactgctaaggaacttaaaccggacgaatacaaaccatctgatctccatcaaacaaccgagattaacgact 140  Q
    |||||||| |||| | ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  33662664 gttaactaccgaggataacttcgacagttaattgctgaggaacttaaaccggacgaatacaaaccatctgatctcaatcaaacgactgagattaacgact 33662565  T
Q  141 gcatgataca-tgctacatatgagtcaaatcctaagttttcaattaaacaaaaacgacacaattgattaaattaaattaaattcacta 227  Q
    ||||||||||  |||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33662564 gcatgatacagggctac--atgagtcaaattctaagttttcaattaaacaaaaacgacacaattgattaaattaaattaaatgcacta 33662479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 33662481 - 33662407
Alignment:
Q  153 ctacatatgagtcaaatcctaagttttcaattaaacaaaaacgacacaattgattaaattaaattaaattcacta 227  Q
    |||||||| ||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  33662481 ctacatataagtgaaatcttaattttccaattaaacaaaaacgacacaattgattaaattaaattaaatgcacta 33662407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 29407937 - 29407890
Alignment:
Q  28 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||||| |||| ||||||| | |||||||||||    
T  29407937 agaaccggctgcagttaactaacgaggaaaacttcggcagttaactgc 29407890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 33662384 - 33662346
Alignment:
Q  181 aattaaacaaaaacgacacaattgattaaattaaattaa 219  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  33662384 aattaaacaaaaaaaacacaattgattaaattaaattaa 33662346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 40156424 - 40156469
Alignment:
Q  30 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||||    
T  40156424 aaccggctgcagttaactgacgaggaaaacttcgacagttaactgc 40156469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 20014760 - 20014610
Alignment:
Q  78 aggaacttaaaccggacgaatacaaaccatctgatctccatcaaacaaccgagattaacgactgcatgatacat-gctacatatgagtcaaatcctaagt 176  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||| |||||||||||| ||||||  |||||||||||||||||    
T  20014760 aggaacttaaaccggacgaatacaatccatcagatctccatcaaacgatcgagattaacgattgcatgatacatggctacacttgagtcaaatcctaagt 20014661  T
Q  177 tttcaattaaacaaaaacgacacaattgattaaattaaattaaattcacta 227  Q
    ||| ||||||||||||||||  ||||||||||||||||||||||| |||||    
T  20014660 ttttaattaaacaaaaacgaagcaattgattaaattaaattaaatgcacta 20014610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 20014405 - 20014331
Alignment:
Q  153 ctacatatgagtcaaatcctaagttttcaattaaacaaaaacgacacaattgattaaattaaattaaattcacta 227  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  20014405 ctacatatgagtcaactcttaattttccaattaaacaaaaacgacacaattgattaaattaaattaaatgcacta 20014331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 6671890 - 6671776
Alignment:
Q  100 caaaccatctgatctccatcaaacaaccgagattaacgactgcatgatacatgctacatatgagtcaaatcct-aagttttcaattaaacaaaaacgaca 198  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||      ||||||| ||| ||||||||| |||||| |||||||||||||||  ||    
T  6671890 caaaccatctgatctccatcaaacggccgagatcaacgactgcatg------gctacatttgattcaaatcctaaagtttccaattaaacaaaaacacca 6671797  T
Q  199 caattgattaaattaaattaa 219  Q
     || | |||| ||||||||||    
T  6671796 aaactaattagattaaattaa 6671776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 20014328 - 20014267
Alignment:
Q  162 agtcaaatcctaagttttcaa-ttaaacaaaaacgacacaattgattaaattaaattaaatt 222  Q
    ||||||||||||| ||| ||| ||||||||||||  ||||||||||||||||||||||||||    
T  20014328 agtcaaatcctaattttccaaattaaacaaaaacatcacaattgattaaattaaattaaatt 20014267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 7820151 - 7820197
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||    
T  7820151 gaaccggctgcagttaactatcgaaaaaaacttcggcagttaactgc 7820197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 28456774 - 28456738
Alignment:
Q  25 tatagaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28456774 tatagaaccggctgcagttaactatcgaggaaaactt 28456738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 13761094 - 13761047
Alignment:
Q  28 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||    
T  13761094 agaaccggctgcagttaactgccgaggaaaacttcgacagttaactgc 13761047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 26770601 - 26770556
Alignment:
Q  30 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  26770601 aaccggctgcagttaactaccgaggaaaattttggcagttaactgc 26770556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 13147517 - 13147565
Alignment:
Q  26 atagaaccggctgcagttaactatcgagaaaaactttgacagttaactg 74  Q
    ||||||||| ||||||||||||| |||| ||||| | ||||||||||||    
T  13147517 atagaaccgactgcagttaactaccgaggaaaacctcgacagttaactg 13147565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 23442295 - 23442327
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||| |||||||    
T  23442295 gaaccggctgcagttaactatcgaggaaaactt 23442327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 27649277 - 27649321
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 73  Q
    |||||||||||||||||||| |||| ||||||| |||||| ||||    
T  27649277 gaaccggctgcagttaactaccgaggaaaacttcgacagtaaact 27649321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28456474 - 28456506
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||| |||||||    
T  28456474 gaaccggctgcagttaactatcgaggaaaactt 28456506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 6524651 - 6524692
Alignment:
Q  181 aattaaacaaaaacgacacaattgattaaattaaattaaatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6524651 aattaaacaaaaacgacacaattgattaaattaaattaaatt 6524692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 44364975 - 44364934
Alignment:
Q  180 caattaaacaaaaacgacacaattgattaaattaaattaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44364975 caattaaacaaaaacgacacaattgattaaattaaattaaat 44364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 6524720 - 6524787
Alignment:
Q  160 tgagtcaaatcctaagttttcaattaaacaaaaacgacacaattgattaaattaaattaaattcacta 227  Q
    ||||||||||| ||| ||  ||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  6524720 tgagtcaaatcttaatttaccaattgaacaaaaacgacacaattgattaagttaaattaaatgcacta 6524787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 6524790 - 6524847
Alignment:
Q  162 agtcaaatcctaagttttcaa-ttaaacaaaaacgacacaattgattaaattaaatta 218  Q
    ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||    
T  6524790 agtcaaatcctaattttccaaattaaacaaaaacaacacaattgattaaattaaatta 6524847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 19341068 - 19341114
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||    
T  19341068 gaaccggctgcagttaactaccgaggaaaacttcgacagttaactgc 19341114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 6524598 - 6524648
Alignment:
Q  97 atacaaaccatctgatctccatcaaacaaccgagattaacgactgcatgat 147  Q
    ||||||||||||||||| || |||||| ||| |||| ||||||||||||||    
T  6524598 atacaaaccatctgatcaccgtcaaacgaccaagatcaacgactgcatgat 6524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 55176397 - 55176351
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||| ||||||||||||||||| ||||||| | |||||||||||    
T  55176397 gaaccggatgcagttaactatcgaggaaaacttcggcagttaactgc 55176351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 6144347 - 6144303
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 73  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||    
T  6144347 gaaccggctgcagttaactaccgaggaaaacttcggcagttaact 6144303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 6525358 - 6525322
Alignment:
Q  38 gcagttaactatcgagaaaaactttgacagttaactg 74  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  6525358 gcagctaactatcgagaaaaactttggcagttaactg 6525322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 21343543 - 21343499
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 73  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||    
T  21343543 gaaccggctgcagttaactaccgaggaaaacttcggcagttaact 21343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 42148316 - 42148348
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||| |||||||    
T  42148316 gaaccggctgcagttaactatcgaggaaaactt 42148348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 52514312 - 52514344
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||| |||||||    
T  52514312 gaaccggctgcagttaactatcgaggaaaactt 52514344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 8179635 - 8179563
Alignment:
Q  119 caaacaaccgagattaacgactgcatgatacatg-ctacatatgagtcaaatcctaagttttcaattaaacaa 190  Q
    ||||| |||||||| ||| ||||||||||||||| || ||||||| |||||||||||||||  ||||||||||    
T  8179635 caaacgaccgagatcaacaactgcatgatacatgactgcatatgattcaaatcctaagtttctaattaaacaa 8179563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 38857127 - 38857173
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||    
T  38857127 gaaccggctgcatttaactatcgagaaaaacttcggcagttaactgc 38857173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 29097221 - 29097266
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactg 74  Q
    |||||||||||||||||||| |||| ||||||| |||| |||||||    
T  29097221 gaaccggctgcagttaactaccgaggaaaacttcgacaattaactg 29097266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 26833527 - 26833479
Alignment:
Q  25 tatagaaccggctgcagttaactatcgagaaaaactttgacagttaact 73  Q
    |||||||||||||||||||||||| |||  ||||||||| |||| ||||    
T  26833527 tatagaaccggctgcagttaactaccgaagaaaactttggcagtaaact 26833479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 29112398 - 29112450
Alignment:
Q  30 aaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaa 82  Q
    ||||||||||||||||||  |||| ||||||| | |||||||||||| |||||    
T  29112398 aaccggctgcagttaactgccgaggaaaacttcggcagttaactgctgaggaa 29112450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 11565889 - 11565935
Alignment:
Q  28 agaaccggctgcagttaactatcgagaaaaactttgacagttaactg 74  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  11565889 agaaccggctgcagttaactgtcgaggaaaacttcgacagttaactg 11565935  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 32538374 - 32538328
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    |||||||||||||||||||||||| |||||||| | |||| ||||||    
T  32538374 gaaccggctgcagttaactatcgaaaaaaacttcggcagtaaactgc 32538328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 18884552 - 18884507
Alignment:
Q  30 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||  |||||||||||| | |||||||||||    
T  18884552 aaccggctgcagttaactgccgagaaaaacttcggcagttaactgc 18884507  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 26791674 - 26791719
Alignment:
Q  30 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||| |||||||||| | | |||||||||||    
T  26791674 aaccggctgcagttaactaccgagaaaaacctcggcagttaactgc 26791719  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 30966706 - 30966634
Alignment:
Q  15 tgtcgaagaatatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaacttaaa 88  Q
    |||||| ||| |||||||||||||||| |||||| |||| ||||||| | |||||||||||  |||||||||||    
T  30966706 tgtcgaggaaaatagaaccggctgcagctaacta-cgaggaaaacttcggcagttaactgccgaggaacttaaa 30966634  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30192515 - 30192562
Alignment:
Q  28 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    |||||||||||||||||||| ||||| ||||||| | |||||||||||    
T  30192515 agaaccggctgcagttaactgtcgaggaaaacttcggcagttaactgc 30192562  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 35671105 - 35671152
Alignment:
Q  28 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||||||  |||| ||||||||| |||||||||||    
T  35671105 agaaccggctgcagttaactgccgaggaaaactttggcagttaactgc 35671152  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 4174107 - 4174153
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||||||||| || ||| |||||||| |||||||||||||    
T  4174107 gaaccggctgcagttaattaccgaaaaaaacttcgacagttaactgc 4174153  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 42732829 - 42732795
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactttg 63  Q
    ||||||||||||||||||||||||| |||||||||    
T  42732829 gaaccggctgcagttaactatcgaggaaaactttg 42732795  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 36313966 - 36314003
Alignment:
Q  38 gcagttaactatcgagaaaaactttgacagttaactgc 75  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  36313966 gcagttaactaccgagaaaaactttggcagttaactgc 36314003  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 23512817 - 23512781
Alignment:
Q  25 tatagaaccggctgcagttaactatcgagaaaaactt 61  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  23512817 tatagaaccggctgtagttaactaccgagaaaaactt 23512781  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 43519926 - 43519958
Alignment:
Q  29 gaaccggctgcagttaactatcgagaaaaactt 61  Q
    ||||||||||||||||||||||||| |||||||    
T  43519926 gaaccggctgcagttaactatcgaggaaaactt 43519958  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 44886845 - 44886817
Alignment:
Q  33 cggctgcagttaactatcgagaaaaactt 61  Q
    |||||||||||||||||||||||||||||    
T  44886845 cggctgcagttaactatcgagaaaaactt 44886817  T

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Target: scaffold0283 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 556 - 584
Alignment:
Q  33 cggctgcagttaactatcgagaaaaactt 61  Q
    |||||||||||||||||||||||||||||    
T  556 cggctgcagttaactatcgagaaaaactt 584  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 134367 - 134331
Alignment:
Q  25 tatagaaccggctgcagttaactatcgagaaaaactt 61  Q
    |||||||||||||||||||||||| |||| |||||||    
T  134367 tatagaaccggctgcagttaactaccgaggaaaactt 134331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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