View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_63 (Length: 271)
Name: NF0914_low_63
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_63 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13747 - 13924
Alignment:
| Q |
1 |
tattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctagttgttggatcaaattatgtgga |
100 |
Q |
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| T |
13747 |
tattgatggttctttaattatgttttccttagatagtttgactattttgttggatgatttcattgtacttgttgctagttgttggatcaaattatgtgga |
13846 |
T |
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| Q |
101 |
ttggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
178 |
Q |
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| T |
13847 |
ttggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
13924 |
T |
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Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 3838266 - 3838443
Alignment:
| Q |
1 |
tattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctagttgttggatcaaattatgtgga |
100 |
Q |
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| T |
3838266 |
tattgatggttctttaattatgttttccttagatagtttgactattttgctggatgatttcattgtacttattgctagttgttggatcaaattatgtgga |
3838365 |
T |
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| Q |
101 |
ttggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
178 |
Q |
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| T |
3838366 |
ttggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
3838443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 29126796 - 29126957
Alignment:
| Q |
14 |
ttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattg-ctagttgttggatcaaattatgtggattggatgatgtt |
112 |
Q |
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| T |
29126796 |
ttaattgtgttttccttaaatagtttgattattttgttagatgatttcattgtatttattgtcta-ttcttagattaaattgtgtggattggattaagac |
29126894 |
T |
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| Q |
113 |
aattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggtt |
176 |
Q |
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| T |
29126895 |
a-ttattatgagttaactttatatttatccacttgcctttgatttcattttctagttgatggtt |
29126957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 33637232 - 33637183
Alignment:
| Q |
115 |
ttattatgagttaagtttatatttctccacttgctattgatttcatttgct |
165 |
Q |
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| T |
33637232 |
ttattatgagttaa-tttatattcctccacttgctattgatttcatttgct |
33637183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 33637356 - 33637279
Alignment:
| Q |
1 |
tattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctag |
78 |
Q |
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|||| ||||||| |||||| ||||||| | |||||||| |||||||||||||| ||| | |||||||||||||||| |
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| T |
33637356 |
tattaatggttccttaattgtgttttcaatagatagtttaactattttgttggatgattcctttgtacttattgctag |
33637279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 13783992 - 13783902
Alignment:
| Q |
21 |
tgttttcctttgatagtttgactattttgttggacaatttcatt-gtacttattgctagttgttggatcaaattatgtggattggatgatg |
110 |
Q |
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| T |
13783992 |
tgttttccttagctagtttgagtattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattggatgatg |
13783902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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