View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_low_75 (Length: 258)
Name: NF0914_low_75
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 33390788 - 33390582
Alignment:
| Q |
36 |
ataaagttcattgggatgcagtggagaaggctgcgaagaaggttatggaaggagaagaagcaaaggaaatgaggaacaaagcaaaagtgcttgcaaaaat |
135 |
Q |
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| T |
33390788 |
ataaagttcattgggatgcagtggagaaggctgtgaagaaggttatggaaggagaagaagcaaaggaaatgaggaacaaagcaaaagtgcttgcaaaaat |
33390689 |
T |
|
| Q |
136 |
ggcaaagaaggctgtggaggaaggtggatcatcttactcacaattgaatgccttgattgaggagctgggttcactttgccaccaccaacacatctcacaa |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33390688 |
ggcaaagaaggctgtggaggaaggtggatcatcttactcacaattgaatgccttgattgaggagctgggttcactttgccaccaccaacacatctcaaaa |
33390589 |
T |
|
| Q |
236 |
gaataat |
242 |
Q |
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||||||| |
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| T |
33390588 |
gaataat |
33390582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 27688544 - 27688349
Alignment:
| Q |
47 |
tgggatgcagtggagaaggctgcgaagaaggttatggaaggagaagaagcaaaggaaatgaggaacaaagcaaaagtgcttgcaaaaatggcaaagaagg |
146 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
27688544 |
tgggatgcagtggagaaggctgtgaagagggttatggaaggggaagaagcatatgaaatgaggaacaaagcaaaaatgcttgcagaaatggcaaagaaag |
27688445 |
T |
|
| Q |
147 |
ctgtggaggaaggtggatcatcttactcacaattgaatgccttgattgaggagctgggttcactttgccaccaccaacacatctcacaagaataat |
242 |
Q |
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||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
27688444 |
ctgtggaagaagatggatcatcttactcacagttgaatgccttaattgaggagctgcgttcactatctcaccaccaacacatctcacaagaataat |
27688349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 19001993 - 19002094
Alignment:
| Q |
101 |
gaaatgaggaacaaagcaaaagtgcttgcaaaaatggcaaagaaggctgtggag---gaaggtggatcatcttactcacaattgaatgccttgattgagg |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19001993 |
gaaatgaggaacaaagcaaaagtgcttgcaaaaatggcaaagaaggttgtggagaaagaaggtggatcatcttactcacaattaaatgccttgattgagg |
19002092 |
T |
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| Q |
198 |
ag |
199 |
Q |
| |
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|| |
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| T |
19002093 |
ag |
19002094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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