View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_77 (Length: 253)
Name: NF0914_low_77
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 5830636 - 5830602
Alignment:
| Q |
132 |
atacaacaaaaaccaattaacactcctcttttctc |
166 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
5830636 |
atacaacaaaaaccaattaacactcctcttttctc |
5830602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 9618666 - 9618632
Alignment:
| Q |
132 |
atacaacaaaaaccaattaacactcctcttttctc |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
9618666 |
atacaacaaaaaccaattaaaactcctcttttctc |
9618632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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