View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_low_86 (Length: 250)
Name: NF0914_low_86
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_low_86 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7561535 - 7561303
Alignment:
| Q |
1 |
caaacccttcaagaaaaacccttatacatacnnnnnnnntaagaatgaaagataaacttgatgcctaacaactacaaaccagaaattaatttaacaactt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7561535 |
caaacccttcaagaaaaaccattatacatacaaaaaaa-taagaatgaaagataaacttgatgcctaacaactacaaaccagaaattaatttaacaactt |
7561437 |
T |
|
| Q |
101 |
taatatcaaccactaggagtactatgtttgaaaaactgacccactccatgtttgcaaatcagtgttgttaaatggaggccaagacgccgcaatggtggat |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7561436 |
taatatcaaccactaggagttctatgtttgaaaaactgacccactccatgtttgcaaatcagtgttgttaaatggaggccaagacgccgcaatggtggac |
7561337 |
T |
|
| Q |
201 |
gctgtggcggattttttgacaacagccatatggat |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
7561336 |
gctgtggcggat-ttttgacaacagccatatggat |
7561303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 601 times since January 2019
Visitors: 6696