View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0914_low_9 (Length: 571)

Name: NF0914_low_9
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0914_low_9
NF0914_low_9
[»] chr5 (9 HSPs)
chr5 (89-475)||(16800774-16801160)
chr5 (411-476)||(21238750-21238816)
chr5 (407-468)||(29964155-29964215)
chr5 (407-468)||(30010583-30010643)
chr5 (413-468)||(16497729-16497784)
chr5 (403-476)||(19223054-19223128)
chr5 (403-468)||(33892824-33892890)
chr5 (408-468)||(2675062-2675122)
chr5 (405-476)||(34909636-34909708)
[»] chr6 (6 HSPs)
chr6 (403-468)||(31996230-31996295)
chr6 (403-468)||(21199607-21199672)
chr6 (398-476)||(8779558-8779637)
chr6 (402-468)||(21010858-21010924)
chr6 (335-453)||(12029043-12029156)
chr6 (403-442)||(7835355-7835394)
[»] chr2 (16 HSPs)
chr2 (403-468)||(13898529-13898594)
chr2 (403-468)||(14039146-14039211)
chr2 (403-468)||(19948591-19948656)
chr2 (403-476)||(38413437-38413511)
chr2 (405-476)||(3991817-3991889)
chr2 (403-476)||(41978881-41978955)
chr2 (403-468)||(43318744-43318809)
chr2 (406-476)||(33262897-33262968)
chr2 (362-476)||(24025892-24026007)
chr2 (404-468)||(37810867-37810931)
chr2 (413-476)||(45161126-45161190)
chr2 (238-373)||(28545913-28546046)
chr2 (424-476)||(35404323-35404376)
chr2 (401-465)||(38295698-38295763)
chr2 (406-462)||(2103530-2103586)
chr2 (412-452)||(11153342-11153382)
[»] chr8 (3 HSPs)
chr8 (404-468)||(33177831-33177895)
chr8 (410-460)||(4871099-4871149)
chr8 (412-475)||(12522425-12522489)
[»] chr7 (10 HSPs)
chr7 (416-468)||(6268554-6268606)
chr7 (405-476)||(19594254-19594326)
chr7 (403-468)||(14732277-14732342)
chr7 (403-468)||(34656658-34656723)
chr7 (412-476)||(21024110-21024175)
chr7 (411-468)||(35313610-35313667)
chr7 (411-468)||(38910534-38910591)
chr7 (394-468)||(1254440-1254515)
chr7 (398-442)||(37392610-37392654)
chr7 (398-465)||(48136862-48136930)
[»] chr3 (14 HSPs)
chr3 (403-470)||(29690682-29690749)
chr3 (403-468)||(9818547-9818612)
chr3 (403-468)||(49293856-49293921)
chr3 (412-468)||(37832625-37832681)
chr3 (399-453)||(30238473-30238528)
chr3 (403-449)||(47467394-47467440)
chr3 (403-468)||(40064331-40064396)
chr3 (398-465)||(33693312-33693380)
chr3 (398-460)||(19386869-19386930)
chr3 (320-373)||(2118337-2118390)
chr3 (411-468)||(27261446-27261503)
chr3 (404-440)||(2118430-2118466)
chr3 (398-476)||(16155208-16155288)
chr3 (398-476)||(50902938-50903018)
[»] chr4 (15 HSPs)
chr4 (403-476)||(54561263-54561337)
chr4 (404-468)||(26448684-26448748)
chr4 (403-476)||(51967321-51967395)
chr4 (413-476)||(9972817-9972881)
chr4 (403-476)||(8563342-8563417)
chr4 (398-476)||(29966374-29966453)
chr4 (411-468)||(6487311-6487368)
chr4 (403-468)||(23170716-23170781)
chr4 (398-465)||(50517249-50517317)
chr4 (403-442)||(41470320-41470359)
chr4 (407-469)||(21306294-21306356)
chr4 (411-476)||(40162833-40162898)
chr4 (412-476)||(26491117-26491182)
chr4 (404-476)||(56423961-56424034)
chr4 (398-476)||(28484389-28484469)
[»] chr1 (8 HSPs)
chr1 (403-476)||(33886842-33886916)
chr1 (403-476)||(33957334-33957408)
chr1 (403-475)||(42638016-42638088)
chr1 (403-476)||(34751554-34751628)
chr1 (403-468)||(34019193-34019258)
chr1 (403-476)||(1108417-1108491)
chr1 (413-476)||(7798565-7798629)
chr1 (398-476)||(42304476-42304556)
[»] scaffold0421 (1 HSPs)
scaffold0421 (403-468)||(1752-1817)
[»] scaffold0246 (1 HSPs)
scaffold0246 (403-476)||(1411-1486)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 89 - 475
Target Start/End: Complemental strand, 16801160 - 16800774
Alignment:
Q  89 ataaagttatggtcaacttaacaacaaaatataaaattaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgc 188  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801160 ataaaattatggtcaacttaacaacaaaatacaaaattaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgc 16801061  T
Q  189 caccactacaaccttaactgttgtgtgtttccgtgttcgtcttttgagaactcagagaagagaataacgttttagaatttcagaagaagtcaagtaatgt 288  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  16801060 caccaccacaaccttaactgttgtgtgtttccgtgttcgtcgtttcagaactcagagaagagtataacgttttagaatttcagaagaagtcaggtaatgt 16800961  T
Q  289 gttattttaattgcaatgacaacgtttcactaccttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttattt 388  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16800960 gttattttaattgcaatgacaacgtttcagtaccttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttattt 16800861  T
Q  389 aacggaaattcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16800860 aacggaaattcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 16800774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 21238750 - 21238816
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  |||| ||| ||||||||||||    
T  21238750 ccgagtttaacatgtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagttt 21238816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 29964215 - 29964155
Alignment:
Q  407 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  29964215 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 29964155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 30010583 - 30010643
Alignment:
Q  407 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  30010583 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 30010643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 16497729 - 16497784
Alignment:
Q  413 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||  ||||||||||||||||||||||||||||||  |||||| |||||    
T  16497729 gagtttaacacatgttaagtcggtcaaactcgtcaaacattccgatttcagcaaaa 16497784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 19223128 - 19223054
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||||||| |||  |||||||| ||||||||||||    
T  19223128 cgagttttccgagtttaacacgtgttaactcggttacactcgtcaaactttccgatttcaccaaaaaccgagttt 19223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 33892824 - 33892890
Alignment:
Q  403 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| |||||    
T  33892824 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaa 33892890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 2675062 - 2675122
Alignment:
Q  408 ttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
T  2675062 ttaccgattttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 2675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 476
Target Start/End: Complemental strand, 34909708 - 34909636
Alignment:
Q  405 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaa-accgagttt 476  Q
    |||||||||||||||||| | ||| | |||||||||||| |||||| |||  ||||||||||| |||||||||    
T  34909708 agtttaccgagtttaacacgcgttcactcggtcaaactcctcaaactttccgatttcaccaaagaccgagttt 34909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 31996230 - 31996295
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  31996230 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 31996295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 21199672 - 21199607
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  ||||||||||||    
T  21199672 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 21199607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 8779558 - 8779637
Alignment:
Q  398 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||| |||||||||||||||||||| | ||||| | ||||||||||||||||| |||  |||||||| ||||||||||||    
T  8779558 tcggacgagtttaccgagtttaacacgagttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 8779637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 468
Target Start/End: Original strand, 21010858 - 21010924
Alignment:
Q  402 tcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||| ||||||| ||| || |||| ||||| |||||||||||||||| | ||||||||||||    
T  21010858 tcgagtttaacgagttttacacgtattaactcggttaaactcgtcaaacattttgatttcaccaaaa 21010924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 453
Target Start/End: Complemental strand, 12029156 - 12029043
Alignment:
Q  335 aaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtc 433  Q
    ||||||||| |||||| ||||||||||  ||||||      ||||||||  || |||| ||| |||||||||||||| ||||||||| | ||||||| |     
T  12029156 aaagaattgagttttgaaagaaaatggatccaaaa------aaatgtttctttaaacgtaaactcggtcgagtttacacgagtttaatacgtgttaacta 12029063  T
Q  434 ggtcaaactcgtcaaacatt 453  Q
     |||||||||||||||||||    
T  12029062 tgtcaaactcgtcaaacatt 12029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Original strand, 7835355 - 7835394
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 442  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  7835355 cgagtttaccgagtttaacacgtgttaactcggtcaaact 7835394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 13898594 - 13898529
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  13898594 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 13898529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 14039211 - 14039146
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  14039211 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 14039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 19948656 - 19948591
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  19948656 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 19948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 38413437 - 38413511
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  38413437 cgagtttatcgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 38413511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 405 - 476
Target Start/End: Complemental strand, 3991889 - 3991817
Alignment:
Q  405 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
T  3991889 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 3991817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 41978955 - 41978881
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 476  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
T  41978955 cgagtttactgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 41978881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 43318744 - 43318809
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  |||| |||||||    
T  43318744 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgattttaccaaaa 43318809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 476
Target Start/End: Complemental strand, 33262968 - 33262897
Alignment:
Q  406 gtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||| || ||||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
T  33262968 gtttaccgagtttaccacgtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 476
Target Start/End: Complemental strand, 24026007 - 24025892
Alignment:
Q  362 gcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 460  Q
    |||||||||||| ||| |||||| || || | ||| || |||||||| || ||||||||||| ||||||| || ||| || |||||||||||||| ||||    
T  24026007 gcccaaaataaaagaagtgtttt-ttaaatgtaaactcagtcgagttcacacgagtttaacacgtgttaactcagtccaattcgtcaaacattctgattt 24025909  T
Q  461 cacc-aaaaccgagttt 476  Q
     ||| ||||||||||||    
T  24025908 taccaaaaaccgagttt 24025892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 37810867 - 37810931
Alignment:
Q  404 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||  |||||||||| ||||||  |||||||||||| ||||||||| | ||||||||||||    
T  37810867 gagtttattgagtttaacacgtgttagatcggtcaaactcatcaaacattatgatttcaccaaaa 37810931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 45161126 - 45161190
Alignment:
Q  413 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||| ||||||| |||||| |||||||||||| |||  |||||||| ||||||||||||    
T  45161126 gagtttaacacgtgttaactcggtcgaactcgtcaaactttccgatttcaccaaaaaccgagttt 45161190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 373
Target Start/End: Complemental strand, 28546046 - 28545913
Alignment:
Q  238 actcagagaagagaataacgttttagaatttcagaagaagtcaagt-aatgtgttattttaattgcaatgacaacgtttcactaccttggacttcaagaa 336  Q
    ||||||||||||||| ||||| | ||  ||||| |||||| ||||  || ||||||| ||||||| || |||||||||||| ||||| ||  |  || ||    
T  28546046 actcagagaagagaagaacgtgtcagtctttcaaaagaag-caagacaacgtgttatgttaattgtaaagacaacgtttcagtacctaggcttgaaaaaa 28545948  T
Q  337 agaattgggttttgcaagaaaatgggcccaaaataaa 373  Q
    |||||||||| ||| ||||||||||  ||||||||||    
T  28545947 agaattgggtattgaaagaaaatgg--ccaaaataaa 28545913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 35404323 - 35404376
Alignment:
Q  424 gtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    ||||||| ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  35404323 gtgttaactcggtcaaactcgtcaaactttccaattttaccaaaaaccgagttt 35404376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 38295698 - 38295763
Alignment:
Q  401 gtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 465  Q
    ||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
T  38295698 gtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 38295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 2103586 - 2103530
Alignment:
Q  406 gtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca 462  Q
    ||||| |||||||| || ||||||| ||| |||||||| ||||||||||| ||||||    
T  2103586 gtttatcgagtttatcaagtgttaactcgctcaaactcatcaaacattctgatttca 2103530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 11153342 - 11153382
Alignment:
Q  412 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacat 452  Q
    ||||||||||| ||||||| ||||||||||||| |||||||    
T  11153342 cgagtttaacacgtgttaactcggtcaaactcgccaaacat 11153382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 33177831 - 33177895
Alignment:
Q  404 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||||  |||||||||||||    
T  33177831 gagtttaccgagtttaacacgtgttaactcagtcaaactcgtcaaacatttcaatttcaccaaaa 33177895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 460
Target Start/End: Original strand, 4871099 - 4871149
Alignment:
Q  410 accgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 460  Q
    |||||||||||||  |||||| ||||| ||||||||||||||| |||||||    
T  4871099 accgagtttaacacatgttaactcggttaaactcgtcaaacatactaattt 4871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 12522425 - 12522489
Alignment:
Q  412 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagtt 475  Q
    |||||||| || ||||||| ||||||||||||||||||| ||  ||||| |||| ||||||||||    
T  12522425 cgagtttaccaagtgttaactcggtcaaactcgtcaaacctttcaattttaccagaaaccgagtt 12522489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 6268606 - 6268554
Alignment:
Q  416 tttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  6268606 tttaacacgtgttaactcggtcaaactcgtcaaacattctaatttcaccaaaa 6268554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 476
Target Start/End: Complemental strand, 19594326 - 19594254
Alignment:
Q  405 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  19594326 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 19594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 14732277 - 14732342
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  14732277 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 14732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 34656723 - 34656658
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
T  34656723 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 34656658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 21024175 - 21024110
Alignment:
Q  412 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  21024175 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 21024110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 35313667 - 35313610
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||||| |||||||||||| |||||| |||  ||||||||||||    
T  35313667 ccgagtttaacacgtgttaactcggtcaaactcatcaaactttccgatttcaccaaaa 35313610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 38910591 - 38910534
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  38910591 ccgagtttaacacgtgttaactcggtcaatctcgtcaaactttccgatttcaccaaaa 38910534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 1254440 - 1254515
Alignment:
Q  394 aaattcggtcgagtttaccga-gtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||| | |||||| | |||||||| ||||||| |||||||||||| ||||||| ||  ||||||||||||    
T  1254440 aaattcggtcaaatttacctaagtttaacacgtgttaactcggtcaaactcatcaaacagtccgatttcaccaaaa 1254515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 37392610 - 37392654
Alignment:
Q  398 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaact 442  Q
    |||| |||||||||||||||||||| ||||||| ||| |||||||    
T  37392610 tcggacgagtttaccgagtttaacacgtgttaactcgatcaaact 37392654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 48136862 - 48136930
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 465  Q
    |||||||||||||| ||| |||| |  ||||||| || |||||||||||||||| ||||||||| ||||    
T  48136862 tcggtcgagtttacacgaatttatcgagtgttaactcagtcaaactcgtcaaaccttctaattttacca 48136930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 29690749 - 29690682
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaacc 470  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||    
T  29690749 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcatacattctgatttcacaaaaacc 29690682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 9818547 - 9818612
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  9818547 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 9818612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 49293921 - 49293856
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  49293921 cgagtttaccgaatttaacacgtgttaattcggtcaaactcgtcaaactttccgatttcaccaaaa 49293856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 37832681 - 37832625
Alignment:
Q  412 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||    
T  37832681 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttctgatttcaccaaaa 37832625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 30238473 - 30238528
Alignment:
Q  399 cggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacatt 453  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  30238473 cggtcgagtttactcgagtttaacatgtgttaattcggtcaaactcatcaaacatt 30238528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 47467394 - 47467440
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaa 449  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  47467394 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcaaa 47467440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 40064396 - 40064331
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||||||||||| ||||||| | ||||||| ||||||||| ||   ||||||||||||    
T  40064396 cgagtttaccgagtttaacacgtgttaacttggtcaaattcgtcaaacttttcgatttcaccaaaa 40064331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 33693380 - 33693312
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 465  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
T  33693380 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 33693312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 19386869 - 19386930
Alignment:
Q  398 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 460  Q
    ||||||||||||||  ||||||||| ||||||| |||||||||||| ||| |||||| |||||    
T  19386869 tcggtcgagtttacgaagtttaacacgtgttaactcggtcaaactc-tcagacattccaattt 19386930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 2118337 - 2118390
Alignment:
Q  320 accttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaa 373  Q
    ||||||||||| || |||||||||||||||| ||||||||   |||||||||||    
T  2118337 accttggacttgaaaaaagaattgggttttgaaagaaaataaacccaaaataaa 2118390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 27261503 - 27261446
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||||| || |||||| ||||||||| |||  ||||||||||||    
T  27261503 ccgagtttaacacgtgttaactcagtcaaattcgtcaaactttccgatttcaccaaaa 27261446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 2118430 - 2118466
Alignment:
Q  404 gagtttaccgagtttaacatgtgttaagtcggtcaaa 440  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  2118430 gagtttaccgagtttaacacgtgttaactcggtcaaa 2118466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 16155288 - 16155208
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 476  Q
    |||||||||||||| ||||||||    ||||||| ||||||||||||||||||| ||| ||||| | | ||||||||||||    
T  16155288 tcggtcgagtttacacgagtttactgagtgttaactcggtcaaactcgtcaaaccttccaattttatcaaaaaccgagttt 16155208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 50902938 - 50903018
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 476  Q
    |||||||||||||| |||||||| |  ||||||| || ||||||||||| |||| ||| ||||| |||| |||||||||||    
T  50902938 tcggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagttt 50903018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 54561337 - 54561263
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||||| |||  |||||||| ||||||||||||    
T  54561337 cgagtttaccgagtttaacacgtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagttt 54561263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 26448748 - 26448684
Alignment:
Q  404 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  26448748 gagtttaccgagtttaacgcgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 26448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 51967395 - 51967321
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
T  51967395 cgagtttaccgaatttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 51967321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 9972881 - 9972817
Alignment:
Q  413 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  9972881 gagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 9972817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 8563342 - 8563417
Alignment:
Q  403 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 476  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
T  8563342 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 8563417  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 29966374 - 29966453
Alignment:
Q  398 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||||| ||| ||   |||||||| ||||||||||||    
T  29966374 tcggacgagtttaccgagtttaacacatgttaactcggtcaaactcgtcgaacttttcgatttcaccaaaaaccgagttt 29966453  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 6487311 - 6487368
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  6487311 ccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 6487368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 23170716 - 23170781
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||| |||||||||||  |||||| ||||||||||||||||||| ||   ||||||||||||    
T  23170716 cgagtttatcgagtttaacacatgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 23170781  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 50517317 - 50517249
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 465  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| ||| ||||| ||||    
T  50517317 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttccaattttacca 50517249  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Original strand, 41470320 - 41470359
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 442  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  41470320 cgagtttaccgagtttaacacgtgttaactcggtcaaact 41470359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 21306294 - 21306356
Alignment:
Q  407 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaac 469  Q
    |||||||||||||||| ||||||| |||  |||| ||||||||| |||| ||||||| |||||    
T  21306294 tttaccgagtttaacacgtgttaactcgaccaaattcgtcaaactttctgatttcactaaaac 21306356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 40162898 - 40162833
Alignment:
Q  411 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    ||||||||| || ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  40162898 ccgagttta-cacgtgttaactcggtcaaactcgtcaaactttccgatttcaccgaaaaccgagttt 40162833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 26491117 - 26491182
Alignment:
Q  412 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 476  Q
    |||||||| ||  |||||| ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  26491117 cgagtttaccaaatgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccgagttt 26491182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 476
Target Start/End: Original strand, 56423961 - 56424034
Alignment:
Q  404 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 476  Q
    |||||||||||||||||||  |||||| | |||||||||| |||||| |||  |||||||  ||||||||||||    
T  56423961 gagtttaccgagtttaacacatgttaacttggtcaaactcatcaaactttccgatttcactaaaaaccgagttt 56424034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 28484469 - 28484389
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 476  Q
    |||||||||||||| |||||||| |  ||||||| || ||||||||||| |||| ||| ||||| |||| |||||||||||    
T  28484469 tcggtcgagtttacacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagttt 28484389  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 33886842 - 33886916
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33886842 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33886916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 33957408 - 33957334
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33957408 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33957334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 42638016 - 42638088
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 475  Q
    |||||||||| | || ||||  ||||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  42638016 cgagtttaccaaattaaacacatgttaagtcggtcaaactcatcaaacattctgatttcacaaaaaccgagtt 42638088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 34751554 - 34751628
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||||||||||||| ||||||| ||||||||||| | ||||| |||  |||||||| ||||||||||||    
T  34751554 cgagtttaccgagtttaacacgtgttaactcggtcaaacttggcaaactttccgatttcaccaaaaaccgagttt 34751628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 34019258 - 34019193
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  34019258 cgagtttaccgaatttaacacgtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaa 34019193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 1108491 - 1108417
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||| ||||||||||| | ||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
T  1108491 cgagtttatcgagtttaacacgcgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 1108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 7798629 - 7798565
Alignment:
Q  413 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 476  Q
    |||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  7798629 gagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 7798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 42304476 - 42304556
Alignment:
Q  398 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 476  Q
    |||||||||||||| |||||||| |  ||||||| |||||||||||||| |||| ||| ||||| |||| |||||||||||    
T  42304476 tcggtcgagtttacacgagtttacctagtgttaactcggtcaaactcgttaaaccttccaattttaccagaaaccgagttt 42304556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 1817 - 1752
Alignment:
Q  403 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 468  Q
    |||||||| | ||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  1817 cgagtttaacaagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 1752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 1486 - 1411
Alignment:
Q  403 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 476  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| |||  |||||||  ||||||||||||    
T  1486 cgagtttacacgagtttaacacgtgttaactcggttaaactcgtcaaactttccgatttcactaaaaaccgagttt 1411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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