View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_high_14 (Length: 326)

Name: NF0915_high_14
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_high_14
NF0915_high_14
[»] chr4 (9 HSPs)
chr4 (1-326)||(42769527-42769852)
chr4 (141-307)||(42743797-42743963)
chr4 (141-307)||(42753156-42753322)
chr4 (141-292)||(42717169-42717320)
chr4 (141-293)||(42762778-42762930)
chr4 (141-307)||(42734550-42734716)
chr4 (39-120)||(42762694-42762775)
chr4 (33-113)||(42734726-42734806)
chr4 (33-101)||(42717079-42717147)
[»] chr5 (1 HSPs)
chr5 (148-307)||(23040511-23040670)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 42769527 - 42769852
Alignment:
Q  1 atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769527 atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa 42769626  T
Q  101 tgtccgcttcatagcatccaccgcctacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag 200  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769627 tgtctgcttcatagcatccaccgcccacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag 42769726  T
Q  201 gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769727 gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt 42769826  T
Q  301 acatttgtggatttaccagcatctgc 326  Q
    ||||||||||||||||||||||||||    
T  42769827 acatttgtggatttaccagcatctgc 42769852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 42743797 - 42743963
Alignment:
Q  141 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 240  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42743797 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42743896  T
Q  241 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 307  Q
    || || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||    
T  42743897 ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttg 42743963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 42753156 - 42753322
Alignment:
Q  141 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 240  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42753156 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42753255  T
Q  241 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 307  Q
    || || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||    
T  42753256 ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttg 42753322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 42717169 - 42717320
Alignment:
Q  141 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 240  Q
    |||||| |||||||||||  |||||||||| || || ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||||||    
T  42717169 ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcct 42717268  T
Q  241 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactat 292  Q
    || || |||||||||||||||| |||||||||||||| ||| ||||||||||    
T  42717269 ccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactat 42717320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 42762778 - 42762930
Alignment:
Q  141 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 240  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42762778 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct 42762877  T
Q  241 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatg 293  Q
    || || ||||||||||| |||||||||||||| |||   || |||||||||||    
T  42762878 ccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtgcactatg 42762930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 141 - 307
Target Start/End: Complemental strand, 42734716 - 42734550
Alignment:
Q  141 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 240  Q
    |||||| ||||||||||| | ||||||||| || || ||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||||||    
T  42734716 ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct 42734617  T
Q  241 cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 307  Q
    || || ||||||||||||||||||||||||||  ||  ||| || ||||||| ||||||| ||||||    
T  42734616 ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttg 42734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 42762694 - 42762775
Alignment:
Q  39 acccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca 120  Q
    ||||| |||| |||||| |||||||||||| |||  |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  42762694 acccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca 42762775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 42734806 - 42734726
Alignment:
Q  33 atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcata 113  Q
    |||||||| || |||| | |||| |||||||||||| |||  |||||||||||| |||||||||||||| || || |||||    
T  42734806 atcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata 42734726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 42717079 - 42717147
Alignment:
Q  33 atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaat 101  Q
    ||||||||||| |||| | |||| ||| || ||||| |||  |||||||||||| ||||||||||||||    
T  42717079 atcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaat 42717147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 23040670 - 23040511
Alignment:
Q  148 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg 247  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||  | |    
T  23040670 accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacag 23040571  T
Q  248 ttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 307  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  23040570 ttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttcatttg 23040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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