View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_high_18 (Length: 319)
Name: NF0915_high_18
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 46063128 - 46063413
Alignment:
| Q |
23 |
atcatcaaaatccttctcggggctgttaaggtcttcttcctgtgactgagaccttgaagtaacnnnnnnnggagatgaaccacagcatcaaattagagtg |
122 |
Q |
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| T |
46063128 |
atcatcaaaatccttctcggggctgttaaggtcttcttcctgtgactgagaccttgaagtaacaaaaaaaggagatgaaccacagcatcaaattagagtg |
46063227 |
T |
|
| Q |
123 |
atctactacgtactgccagctcgtagaagtcaagcaatactgcaaaatgtaaacgagtgaaagtatctaccttgatctttcctccctgtgcatctcaact |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46063228 |
atctactacgtactgccagctcgtagaagtcaagcaatactgcaaaatgtaaacgagtaaaagtatctaccttgatctttcctccctgtgcatctcaact |
46063327 |
T |
|
| Q |
223 |
tcttctttcagctgagcaatctcttcagtcatcctgaccatacaagcagttagaataggggactcttaaatttatatacaattcat |
308 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
46063328 |
tcttctttcagctgtgcaatctcttcaatcatcctgaccattcaagcagttagaatagaggactcttaaatttatatactattcat |
46063413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 46058487 - 46058768
Alignment:
| Q |
23 |
atcatcaaaatccttctcggggctgttaaggtcttcttcctgtgactgagaccttgaagtaacnnnnnnnggagatgaaccacagcatcaaattagagtg |
122 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
46058487 |
atcatcaaaacccttctcggggatgttaaggtcttcttcctgtgactgagaccttgaagtaaaaaaaatgggagatgaaacacagcatcaaattagagtg |
46058586 |
T |
|
| Q |
123 |
atctactacg-tactgccagctcgtagaagtcaagcaatactgcaaaatgtaaacgagtgaaagtatctaccttgatctttcctccctgtgcatctcaac |
221 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||| |
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| T |
46058587 |
atctactatggtactgccagctcgtagaagtcaagcaatactgcaaaatgtaaacgagtaaaagtatttaccttgatttttcctccctgtgcatcgcaac |
46058686 |
T |
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| Q |
222 |
ttcttctttcagctgagcaatctcttcagtcatcctgaccatacaagcagttagaataggggactcttaaatttatatacaatt |
305 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
46058687 |
ttcttctttcagctgtgcaatctcctcagtcatcctgaccatacaagcggttagaata--ggactcttaaagttatatacaatt |
46058768 |
T |
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