View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_high_23 (Length: 288)
Name: NF0915_high_23
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 18351818 - 18351608
Alignment:
| Q |
28 |
catatatttcaaattaaaacaagaaaaatgctagcaatacactattttaatcacatgtctttgtatttactaaaattcatatgggtctgactaaattaat |
127 |
Q |
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| T |
18351818 |
catatatttcaaattaaaataagaaaaatgctagcaatacactattttaattacatgtctttgtatttactaaaattcatacgggtctgactaaattaat |
18351719 |
T |
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| Q |
128 |
gttaaatccacattatttagtggctccaatttaaa-tttgactaacagcaagacttgtattgaaaagtatatattaaaatgtatactgttcacacttatc |
226 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18351718 |
gttaaatccatattatttagtggctccaatttaaattttgactatcagcaagactggtattgaaaagtatatattaaaatgtatattgttcacacttatc |
18351619 |
T |
|
| Q |
227 |
ataaaagtgat |
237 |
Q |
| |
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||||||||||| |
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| T |
18351618 |
ataaaagtgat |
18351608 |
T |
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