View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_high_24 (Length: 288)
Name: NF0915_high_24
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 20338206 - 20338002
Alignment:
| Q |
34 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338206 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
20338107 |
T |
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| Q |
134 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtttggagaattggagagtagaaaggtt |
233 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338106 |
gaatttcggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtttggagaattggagagtagaaaggtt |
20338007 |
T |
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| Q |
234 |
gaaag |
238 |
Q |
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||||| |
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| T |
20338006 |
gaaag |
20338002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 20141610 - 20141782
Alignment:
| Q |
35 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaatg |
134 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||| ||| ||||||||||| ||| |
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| T |
20141610 |
agagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaggaagcaaggaaagcacatcggtgatttgctcgttagggatg |
20141709 |
T |
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| Q |
135 |
aattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgt |
207 |
Q |
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| T |
20141710 |
aattttggtggcatgatggtaggacgccgtgatggtgataggtgattcatgatgggatttttgttacaaatgt |
20141782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 20126929 - 20127103
Alignment:
| Q |
34 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
133 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
20126929 |
cagagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaagaagtaaagagagcaaatcggggatgtgctcgttaggaat |
20127028 |
T |
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| Q |
134 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtt |
208 |
Q |
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| T |
20127029 |
gaattttggtgacgtggtggtagaatgttgtgatggagaaagaggattcattatgggatttttgttacaaatgtt |
20127103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 20134107 - 20134272
Alignment:
| Q |
34 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
133 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||| | |
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| T |
20134107 |
cagagatgagagagtcatgtggcttactcaagcacctaaatcgaagaagagatttgacgggaaggagggaaagcaagttggggatgtggtcgttaggatt |
20134206 |
T |
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| Q |
134 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgtt |
199 |
Q |
| |
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||||||||||||| || |||||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
20134207 |
gaattttggtgacatgttggtaggacgttgtgatggagataggagattcatgatgggatttttgtt |
20134272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 20375296 - 20375362
Alignment:
| Q |
36 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
20375296 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagg |
20375362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 20361999 - 20362066
Alignment:
| Q |
36 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
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| T |
20361999 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagggatttgacgggaagcaagga |
20362066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 20351372 - 20351305
Alignment:
| Q |
36 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
103 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
20351372 |
gagatgagagagtcatgcaacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagga |
20351305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 20407523 - 20407458
Alignment:
| Q |
35 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaa |
100 |
Q |
| |
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||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
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| T |
20407523 |
agagatgagagagtcatatgacttacttaagcacctaaatcgaaggagtgatttgacgggaagtaa |
20407458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 20360451 - 20360396
Alignment:
| Q |
36 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgac |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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|
| T |
20360451 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaagtagaaatttgac |
20360396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 20442199 - 20442137
Alignment:
| Q |
35 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaag |
97 |
Q |
| |
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||||||||||||||||| ||||||||| || |||||||||| || ||| |||||||| ||||| |
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| T |
20442199 |
agagatgagagagtcatatgacttacttaagcacctaaatcaaatgagtgatttgacgggaag |
20442137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 20139194 - 20139235
Alignment:
| Q |
50 |
atgtgacttactcaaacacctaaatcgaaggagagatttgac |
91 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
20139194 |
atgtgacttactcaagcacctaaatcaaaggagagatttgac |
20139235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 20423152 - 20423097
Alignment:
| Q |
35 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttga |
90 |
Q |
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||||||||||||||||| ||||||||| || ||||| |||||||||| ||||||| |
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| T |
20423152 |
agagatgagagagtcatatgacttacttaagcacctgaatcgaaggaatgatttga |
20423097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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