View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_high_3 (Length: 550)
Name: NF0915_high_3
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 30 - 539
Target Start/End: Complemental strand, 37915945 - 37915436
Alignment:
| Q |
30 |
aattccacctccaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatca |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915945 |
aattccacctcgaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatca |
37915846 |
T |
|
| Q |
130 |
gtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactccca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915845 |
gtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactccca |
37915746 |
T |
|
| Q |
230 |
acaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915745 |
acaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactac |
37915646 |
T |
|
| Q |
330 |
agtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgcaaaaaacatgaagtacactagatcactt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37915645 |
agtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgcaaaaaacatgaagtacactagatcactt |
37915546 |
T |
|
| Q |
430 |
ttactttgttctgatttgaccatacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgtggtgttgagtctttacatttatcaatgatcc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37915545 |
ttactttgttctgatttgaccatacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgtggtgttgagtctttacatttatcaatgatcc |
37915446 |
T |
|
| Q |
530 |
atcccttcat |
539 |
Q |
| |
|
|||||||||| |
|
|
| T |
37915445 |
atcccttcat |
37915436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 497
Target Start/End: Complemental strand, 37907782 - 37907310
Alignment:
| Q |
40 |
ccaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37907782 |
ccaccatctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaa |
37907683 |
T |
|
| Q |
140 |
catcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatc |
239 |
Q |
| |
|
||||||||||||| ||||||| ||||| | || |||||||| ||||||| || |||| |||||||||| |||||||||||| || | ||||| ||||| |
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|
| T |
37907682 |
catcaagtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatc |
37907583 |
T |
|
| Q |
240 |
actcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaa |
339 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||| | ||| ||||||||||||| |||||||||||||||| |||||||| || ||||||| |
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|
| T |
37907582 |
actcttaaaatctcttatcttcttttaaatagcatttgctg---caacaataccatctttttcaactaactcacccctttttacaaccacgttataagag |
37907486 |
T |
|
| Q |
340 |
gcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgcaaaaaacatgaagtacactag----------------- |
422 |
Q |
| |
|
|||| ||| ||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| |
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|
| T |
37907485 |
gcaacacaatttccaaaataagatttagctaatgaaaattcagaacggtcacgacaatctgcaaagaacatgaagtagactagatcatcatcaccaacgc |
37907386 |
T |
|
| Q |
423 |
-atcacttttactttgttctgatttgaccatacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtg |
497 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37907385 |
aatcacttttgctttgctctgattttaccatacaaaaccaaatcaaggaacatgttacaacaaatgttgacatgtg |
37907310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 30 - 409
Target Start/End: Original strand, 37960250 - 37960629
Alignment:
| Q |
30 |
aattccacctccaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatca |
129 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||||| || || |||||||||||||| |
|
|
| T |
37960250 |
aattccacctccgccgtctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaacagcatcagatttcttaggcttcccccacccaaaatct |
37960349 |
T |
|
| Q |
130 |
gtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactccca |
229 |
Q |
| |
|
|||||||||||| | | ||| || || |||| ||||| | ||||| ||||| |||||| |||||||||||||||| |||||| |||||| |||| | |
|
|
| T |
37960350 |
gtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctccta |
37960449 |
T |
|
| Q |
230 |
acaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactac |
329 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||| ||| ||| || ||| ||| || ||| |||| |||||||| ||||||| | || |||||| | || |
|
|
| T |
37960450 |
acaaagcatgactctttaaatgtcttatcttcttttcgataccaattgaagccgaaacaatcccattttttccaattaactcatctctctttacagccac |
37960549 |
T |
|
| Q |
330 |
agtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgcaaaaaaca |
409 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| |
|
|
| T |
37960550 |
ggtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaagaaaca |
37960629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 37954441 - 37954552
Alignment:
| Q |
30 |
aattccacctccaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatca |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||| |||||||| || || ||||| |||||||| |
|
|
| T |
37954441 |
aattccacctccaccacctctacaatcagaaagagaaatcgaaccggatgaatcaagatgaactgcatcagatttcttaggcttcccccatccaaaatct |
37954540 |
T |
|
| Q |
130 |
gtctcataaaca |
141 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37954541 |
gtctcataaaca |
37954552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 37960703 - 37960751
Alignment:
| Q |
450 |
catacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgt |
498 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
37960703 |
catacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgt |
37960751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 30 - 402
Target Start/End: Complemental strand, 3784096 - 3783715
Alignment:
| Q |
30 |
aattccacctccaccatctctacaatcagaaagagaaatcgaactgga------cgaatcaatatgcactacatcggatttctttggttttccccaccca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| ||| ||| |||| ||||| || || || |||||||| |
|
|
| T |
3784096 |
aattccacctccaccatctctacaatcagaaagagaaatagaaatcgaagacgacgaatcaagatgaactgcatcagattttttaggcttcccccacccg |
3783997 |
T |
|
| Q |
124 |
aaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaa |
223 |
Q |
| |
|
|| ||||||||||||||||||| |||||| || |||| || | |||||| ||||| |||||| || ||| |||| ||||| || || || | |
|
|
| T |
3783996 |
aagtcagtctcataaacatcaaatttaggtgagccagcaattcctacaacagacttaccaggttttgataattcactatgatcagaagtccaccatttag |
3783897 |
T |
|
| Q |
224 |
ctcccaacaaggcat---cactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatt |
320 |
Q |
| |
|
|| ||||| |||| |||||||||||||||||||||||| ||| ||| ||||||| ||| ||| ||| |||| | |||||||||||||| |||| || |
|
|
| T |
3783896 |
gacctaacaaagcattatcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgttccaactaactcagccctctt |
3783797 |
T |
|
| Q |
321 |
tacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgca |
402 |
Q |
| |
|
|||||| ||| | | | |||||||| |||||||||||| |||| | |||||||| |||| ||| |||||||||||||||| |
|
|
| T |
3783796 |
tacaaccacaattttactggcaagacaatttccaaaataatttttgggtaatgaaatttcaggactatcacgacaatctgca |
3783715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 3783651 - 3783597
Alignment:
| Q |
439 |
tctgatttgaccatacaaaaccaaatcaaggaacatgttacaacaaaagttgaca |
493 |
Q |
| |
|
|||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3783651 |
tctgattttatcaaacaaaaccaaatcaaggaacatgttacaacaaaagttgaca |
3783597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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