View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_high_9 (Length: 390)
Name: NF0915_high_9
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 31172111 - 31172456
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
31172111 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttggatggattcaatatctt |
31172210 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31172211 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttgaaagagtttgtcattttctttatt |
31172310 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaaccgaaaccttccctgtc |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31172311 |
tcagaaaatttatatcttttctgcaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaaccgaaaccttccctgtc |
31172410 |
T |
|
| Q |
316 |
gtattgatgacttgcttctaagacaataaataattatgcacattat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31172411 |
gtattgatgacttgcttctaagacaataaataatgatgcacattat |
31172456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 31145798 - 31146131
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31145798 |
atccaagaagggtaacaacgttaacatgtgaggttctagtaatactggaaacctcattaataaattcttcaccgtttcctttggatgaattcaatatctt |
31145897 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
31145898 |
tatagcgacatgacaaccattgaataactttcctttgtacacaacaccaaaaccaccttgaccaagtttaaccttgaaagagtctgtcattttctttatt |
31145997 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaaccgaaaccttccctgtc |
315 |
Q |
| |
|
|| ||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||| | |||| || | |
|
|
| T |
31145998 |
tctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatatttgtatcattcttagttctaaactgaagctttccttgcc |
31146097 |
T |
|
| Q |
316 |
gtattgatgacttgcttctaagacaataaataat |
349 |
Q |
| |
|
||||| || | ||||||||||||||||| ||||| |
|
|
| T |
31146098 |
gtattaataatttgcttctaagacaatagataat |
31146131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 31201663 - 31202007
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
31201663 |
atccaagaagggtgacaacattaacatgtgaggttctagtaatactagcaacctcattaataaattcttcaccatttcctttggatgaattcaatatctt |
31201762 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31201763 |
tatcgcagcgtggcaaccattgaataactttcctttgtacacaacaccaaaacccccttgaccaagtttaaccttgaaagagtttgtcattttctttatt |
31201862 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaaccgaaaccttccctgtc |
315 |
Q |
| |
|
|| ||| |||||||||||||||| || | ||||||||| ||||||||||||||||| || || || |||||| | |||||| || |||| |||| |||| |
|
|
| T |
31201863 |
tctgaatatttatatcttttctgcaacagagctccatgatcttttaaaaatgcttcgatttttttttcattcctagttctacactgaaattttccttgtc |
31201962 |
T |
|
| Q |
316 |
gtattgatgacttgcttctaagacaataaataattatgcacatta |
360 |
Q |
| |
|
| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
31201963 |
gaattgatgatttgcttctaagacagtaaataattatgcacatta |
31202007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 31189856 - 31190138
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31189856 |
atccaagaagggtgacaacattaacatgtgaggttctagtaatactagaaacttcattaataaattcttcaccgtttcctttggatgaattcaatatctt |
31189955 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
31189956 |
tatagcaacatcacaaccattgagtaactttcctttgtacacaacaccaaaacccccttgaccaagtttaaccttgaaagagtctgtcattttctttagt |
31190055 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaa |
298 |
Q |
| |
|
|| ||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31190056 |
tctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatatttgtatcattcttagttctaaa |
31190138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 31224293 - 31224009
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
31224293 |
atccaagaagggtgacaacattaacatgagaggttctagaaatactagcaacctcattaataaattcctcaccatttccttttgatacattcaatatctt |
31224194 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || |||||||||| ||||||||||||||||||||||||||||| || ||||| || || ||| |||| || ||||||||||| ||||||||| |
|
|
| T |
31224193 |
cactgccacaagacaaccattaaataactttcctttgtacacaacaccaaaacccccttgcccgagcttatcctttaacgagtttgtcatgttctttatt |
31224094 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaacc |
300 |
Q |
| |
|
|| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||| || ||||||||||| || ||||||| |
|
|
| T |
31224093 |
tctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatgtttttatcattctttgtcctaaacc |
31224009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 30960788 - 30960530
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
30960788 |
atccaagaagggtgacaacattaacatgtgaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgatgcattcaaaatctt |
30960689 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
30960688 |
cactgccacatgacaaccattcaataactttcctttgtagacaacaccaaatcccccttgaccaagtttaattttgaacgagtttgtcattttctttatt |
30960589 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaat |
274 |
Q |
| |
|
|| ||||||||||||||||| || | || ||||||||| ||||||| |||||||||||| |
|
|
| T |
30960588 |
tctgaaaatttatatcttttttgcagtagagctccatgatcttttagaaatgcttcaat |
30960530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 30944783 - 30944464
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| |||||| ||||| |
|
|
| T |
30944783 |
atccaagaagggtaacaacattaacatgtgaggttctagtaatactagtaacctcattaataaagtcttcaccaattcctttcgatgcattcaaaatctt |
30944684 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || || ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
30944683 |
cactgctacaagagaaccattgaataactttcctttgtacacagcaccaaaacccccttgaccaagtttaattttgaatgagtttgtcattttctttatt |
30944584 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattcttggttctaaaccgaaaccttccctgtc |
315 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |||| ||| |||||||||||| ||||||| || |||||||||| || |||||| ||| || | ||| |
|
|
| T |
30944583 |
tctgaaaatttatatcttttttgtaatagtgctctatgatcttttaaaaattcttcaatgtttatatcattctttgtcttaaaccaaaattttacatgta |
30944484 |
T |
|
| Q |
316 |
gtattgatgacttgcttcta |
335 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
30944483 |
gtatcgatgacttgcctcta |
30944464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 30986106 - 30985833
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||| ||| ||| |||||||| |
|
|
| T |
30986106 |
atccaagaaggttaacaacattaacatgtgaggttctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatctt |
30986007 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || || |||||||||||||||||||||||||||| ||||||| || |||||||||| ||||| || || |||||||| |||||||||||| |
|
|
| T |
30986006 |
cactgctacaagagaaccattgaataactttcctttgtacaccgcaccaaaacccccttgaccaactttaattttgaatgagtttgtaattttctttatt |
30985907 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattctt |
289 |
Q |
| |
|
|| ||||| ||||||||||| || |||| | |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
30985906 |
tctgaaaacttatatcttttttgcaatagaactccatggtcttttaaaaatgcttcaatgtttatatcattctt |
30985833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 30992270 - 30991997
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||| ||| ||| |||||||| |
|
|
| T |
30992270 |
atccaagaaggttaacaacattaacatgtgaggttctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatctt |
30992171 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || || |||||||||||||||||||||||||||| ||||||| || |||||||||| ||||| || || |||||||| |||||||||||| |
|
|
| T |
30992170 |
cactgctacaagagaaccattgaataactttcctttgtacaccgcaccaaaacccccttgaccaactttaattttgaatgagtttgtaattttctttatt |
30992071 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattctt |
289 |
Q |
| |
|
|| ||||| ||||||||||| || |||| | |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
30992070 |
tctgaaaacttatatcttttttgcaatagaactccatggtcttttaaaaatgcttcaatgtttatatcattctt |
30991997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 30955043 - 30954770
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttagatagattcaatatctt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||| ||| | ||||| |
|
|
| T |
30955043 |
atccaagaagggtaacaacattaacatgtgaggttctagtaatactagtaacctcattaataaattcttcaccatttccttttgatgcatttagcatctt |
30954944 |
T |
|
| Q |
116 |
tatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatt |
215 |
Q |
| |
|
| || || | ||||||| | || |||||||||||||||| |||| || || |||||||||||||||| || || || ||||| |||||||||||| |
|
|
| T |
30954943 |
cactgccacaagggaaccattcactagctttcctttgtacacagcaccgaaacccccttgaccaagtttaattttgaatgaatttgttattttctttatt |
30954844 |
T |
|
| Q |
216 |
tcagaaaatttatatcttttctgtaataaagctccatggtcttttaaaaatgcttcaatattgttatcattctt |
289 |
Q |
| |
|
|| ||||||||||||||||| || | || |||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
30954843 |
tctgaaaatttatatcttttttgcactagagctccatggtcttttaaaaatgcttcaatgtttatatcattctt |
30954770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 31131673 - 31131809
Alignment:
| Q |
140 |
taactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttaaaagagtttgtcattttctttatttcagaaaatttatatcttttctgt |
239 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||||||||||||| || ||||||| |||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
31131673 |
taactttcctttgcacacagcaccaaaacctccttgaccaagtttaaccttgaatgagtttg-cattctctttatttcaaagaatttatatcttttctgc |
31131771 |
T |
|
| Q |
240 |
aataaagctccatggtcttttaaaaatgcttcaatatt |
277 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
31131772 |
aatagagctctatgatcttttaaaaatgcttcaatatt |
31131809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 31131584 - 31131660
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgttt |
92 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31131584 |
atccaagaagggtgacaatattaacatgcgaggttctagaaatactagcaacctcattaataaattcttcaccgttt |
31131660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 31229574 - 31229490
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttaga |
100 |
Q |
| |
|
|||||||||||| | ||| ||||| || |||||| ||| ||| |||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
31229574 |
atccaagaagggcgaaaacattaacgtgagaggttttagtaatgctagaaacctcattcataaattcatcaccatttcctttaga |
31229490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 31214024 - 31213943
Alignment:
| Q |
16 |
atccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttccttt |
97 |
Q |
| |
|
|||||||||||| |||||| ||||| || |||||| | | || ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
31214024 |
atccaagaagggcaacaacattaacgtgagaggtttttgttatgctagaaacctcgttcataaattcttcaccttttccttt |
31213943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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