View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_low_1 (Length: 708)
Name: NF0915_low_1
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 30 - 699
Target Start/End: Complemental strand, 29583056 - 29582393
Alignment:
| Q |
30 |
ccacctagttgattcttccattttgatatagtgcttggagcgtcctagttatgggagagtagtgttgatatagtttgtttatttatatagataaataagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29583056 |
ccacctagttgattcttccattttgatatagtgcttggagcgtcctagttatgggagagtagtgttgatatagtttgtttat----atagataaataagt |
29582961 |
T |
|
| Q |
130 |
atttgatcttaatagttgggttgacctacttatatggttctcttgatgacaaccacaaattgtatttgatcataaaatatctattatacagatagtgctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
29582960 |
atttgatcttaatagttgggttgacctacttatatggttctcttgatgacaaccacaaattgtatttgatcataaaatatctattg--cagatagtgttt |
29582863 |
T |
|
| Q |
230 |
tacaaccacaaatagtaattgatcttaaaatctgtgttacaagaatagtctattctcctttaaaagaaaagtctatgctaacgacaccaagtagaatttg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29582862 |
tacaaccacaaatagtaattgatcttaaaatctgtgttacaagaatagtctattctcctttaaaagaaaagtctatgctaacgacaccaagtagaatttg |
29582763 |
T |
|
| Q |
330 |
ttttcacatgtaccctcacaattttgataataaccgataccctacaaaccgagggatcgtgctttgctactcttttcttttcgttttatcaagtagttta |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29582762 |
ttttcacatgtaccctcacaattttgataataaccgataccctacgaaccgagggatcgtgctttgctactcttttctttttgttttatcaagtagttta |
29582663 |
T |
|
| Q |
430 |
ttgactaaatagaattcattttttaagatgaataatcagggtgtttgaaatttaaacttcgatctctgcatataacaagtggcagagccacatataaatg |
529 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29582662 |
ttgactaaatagaattcattttttaaggtgaataatcagggtgtttggaatttaaatttcgatccctgcatataacaagtggcggagccacgtataaatg |
29582563 |
T |
|
| Q |
530 |
agagaatatgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcc |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29582562 |
agagaatatgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatcaacctcc |
29582463 |
T |
|
| Q |
630 |
taatatattttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
29582462 |
tgatatattttaacattgcacttgagccaaacattttgcaccaataacccaagtttccctcaccctatga |
29582393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 537 - 699
Target Start/End: Original strand, 34132057 - 34132217
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || ||| |
|
|
| T |
34132057 |
atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggatgaaccttct--cata |
34132154 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| ||||| |||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
34132155 |
ttttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga |
34132217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 699
Target Start/End: Original strand, 53911846 - 53912006
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||||||||||| ||| |
|
|
| T |
53911846 |
atgcacttgcatcccctgggcttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatattttaaggatgaacctcct--cata |
53911943 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| ||||| |||||| || |||||||||| |||||||| |||||||||||| |
|
|
| T |
53911944 |
ttttaacattgcaattgagccaaacattttgcaccaataatccaagtttctctcaccctatga |
53912006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 617
Target Start/End: Complemental strand, 21181553 - 21181493
Alignment:
| Q |
557 |
cttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaa |
617 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||| || ||||||||||| |
|
|
| T |
21181553 |
cttttaaattttgcacatgatggcactgttttcatgctacttgaacctactgatattttaa |
21181493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 537 - 699
Target Start/End: Complemental strand, 3626954 - 3626794
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| ||| |
|
|
| T |
3626954 |
atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggatgaacctcct--cata |
3626857 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| ||||| |||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
3626856 |
ttttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga |
3626794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 537 - 699
Target Start/End: Original strand, 21466443 - 21466603
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| ||||||| ||| | ||||||||||||||||||||||||| |||||||||| | |||||| ||| |||||||||||||||||||||||| ||| |
|
|
| T |
21466443 |
atgcacttgcatcccctgatcttttaaaatttgcacatgattgcagtgttttattagtgcttgaacctcctgatattttaaggatgaacctcct--cata |
21466540 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| ||||| |||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
21466541 |
ttttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga |
21466603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 557 - 699
Target Start/End: Original strand, 33224180 - 33224320
Alignment:
| Q |
557 |
cttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatatattttaacattgcacttgagt |
656 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
33224180 |
cttttaaaatttccacatgattgcactgttttattagtgtttgaacctcctgatattttaaggatgaacctcct--catattttaacattgcaattgagc |
33224277 |
T |
|
| Q |
657 |
caaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
|||||| | |||||||||| |||||||| |||||||||||| |
|
|
| T |
33224278 |
caaacatattgcaccaataatccaagtttctctcaccctatga |
33224320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 618 - 699
Target Start/End: Complemental strand, 26648226 - 26648147
Alignment:
| Q |
618 |
ggatgaacctcctaatatattttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||| |||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
26648226 |
ggatgaacctcctcatat--tttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga |
26648147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 556 - 699
Target Start/End: Original strand, 15137095 - 15137236
Alignment:
| Q |
556 |
gcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatatattttaacattgcacttgag |
655 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | |||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
15137095 |
gcttttaaaatttgcacatgattgtactgttttattagtgcttgaacctcctgatattttaaggatgaacctcct--catattttaacattgcaattgag |
15137192 |
T |
|
| Q |
656 |
tcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
15137193 |
ccaaacattttgcaccaataacccaagtttctctcaccctatga |
15137236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 699
Target Start/End: Complemental strand, 8371145 - 8370985
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| ||| |||||||||||| ||||||||||| ||| |
|
|
| T |
8371145 |
atgcacttgcatctcctgagcttttaaaatttgcacatgattgtactgttttattagtgcttgaacctcctgatattttaagaatgaacctcct--cata |
8371048 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
| ||||||||||| ||||| |||||| || ||||||||||| |||||||| |||| ||||||| |
|
|
| T |
8371047 |
tcttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcagcctatga |
8370985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 699
Target Start/End: Complemental strand, 34845351 - 34845191
Alignment:
| Q |
537 |
atgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatata |
636 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||| ||| ||||| ||| |
|
|
| T |
34845351 |
atgcacttgcatttcctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggaagaatctcct--cata |
34845254 |
T |
|
| Q |
637 |
ttttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
||||||||||||| ||||| |||||| || |||||||||| |||||||| |||||||||||| |
|
|
| T |
34845253 |
ttttaacattgcaattgagccaaacattttacaccaataacccaagtttctctcaccctatga |
34845191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 556 - 699
Target Start/End: Complemental strand, 514000 - 513859
Alignment:
| Q |
556 |
gcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatatattttaacattgcacttgag |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
514000 |
gcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggatgaatctcct--catattttaacattgcaattgag |
513903 |
T |
|
| Q |
656 |
tcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
|||||| || |||||||||| |||||||| |||||||||||| |
|
|
| T |
513902 |
ccaaacattttgcaccaataatccaagtttctctcaccctatga |
513859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 617
Target Start/End: Original strand, 2851094 - 2851155
Alignment:
| Q |
556 |
gcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaa |
617 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| | ||||||||| || ||||||||||| |
|
|
| T |
2851094 |
gcttttaaattttgcacatgatggcactgttttcatgctacttgaacctactgatattttaa |
2851155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 557 - 699
Target Start/End: Original strand, 39175023 - 39175163
Alignment:
| Q |
557 |
cttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaaggatgaacctcctaatatattttaacattgcacttgagt |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
39175023 |
cttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatattttaaggatgaacctcct--catattttaacattgcaattgagc |
39175120 |
T |
|
| Q |
657 |
caaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
39175121 |
caaacattttgcaccaataacccaagtttctctcaccctatga |
39175163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 36258743 - 36258678
Alignment:
| Q |
439 |
tagaattcattttttaagatgaataatcagggtgtttgaaatttaaacttcgatctctgcatataa |
504 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
36258743 |
tagaattcatcttttaaaatgaataagtgggatgtttgagattcaaacttcgatccctgcatataa |
36258678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 617
Target Start/End: Complemental strand, 35204535 - 35204474
Alignment:
| Q |
556 |
gcttttaaaatttgcacatgattgcactgttttattactacttgaatctcatgatattttaa |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||| | ||||||||| |
|
|
| T |
35204535 |
gcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctcatattttaa |
35204474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 699
Target Start/End: Complemental strand, 35204482 - 35204417
Alignment:
| Q |
634 |
atattttaacattgcacttgagtcaaacaattggcaccaataactcaagtttccctcaccctatga |
699 |
Q |
| |
|
|||||||||||||||| |||| |||||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
35204482 |
atattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga |
35204417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 447 - 507
Target Start/End: Original strand, 34561987 - 34562047
Alignment:
| Q |
447 |
attttttaagatgaataatcagggtgtttgaaatttaaacttcgatctctgcatataacaa |
507 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
34561987 |
atttttaaagatgaataagtcggatgtttgaaatttaaacttcgatccctgtatattacaa |
34562047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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