View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_11 (Length: 462)

Name: NF0915_low_11
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_11
NF0915_low_11
[»] chr4 (10 HSPs)
chr4 (29-406)||(18420713-18421087)
chr4 (101-184)||(10116264-10116347)
chr4 (162-300)||(11251987-11252125)
chr4 (101-208)||(12410304-12410412)
chr4 (128-208)||(11924005-11924086)
chr4 (128-177)||(13933012-13933061)
chr4 (101-157)||(13305495-13305551)
chr4 (101-157)||(20847122-20847178)
chr4 (112-171)||(20749883-20749942)
chr4 (162-198)||(20749943-20749979)
[»] scaffold0115 (1 HSPs)
scaffold0115 (104-391)||(41377-41664)
[»] chr5 (5 HSPs)
chr5 (101-403)||(37277562-37277865)
chr5 (101-208)||(37275479-37275586)
chr5 (112-198)||(34178897-34178982)
chr5 (165-296)||(20846604-20846734)
chr5 (117-178)||(30191021-30191081)
[»] scaffold0111 (1 HSPs)
scaffold0111 (128-403)||(28360-28632)
[»] chr6 (11 HSPs)
chr6 (128-387)||(12478496-12478751)
chr6 (101-405)||(24216831-24217137)
chr6 (101-319)||(14796533-14796746)
chr6 (166-294)||(16165785-16165911)
chr6 (151-294)||(17827215-17827356)
chr6 (101-206)||(12484665-12484770)
chr6 (105-179)||(12331825-12331899)
chr6 (101-158)||(17912746-17912803)
chr6 (108-188)||(30754932-30755012)
chr6 (129-203)||(19841512-19841587)
chr6 (101-135)||(17908035-17908069)
[»] chr7 (15 HSPs)
chr7 (112-302)||(15010849-15011036)
chr7 (101-342)||(17842845-17843075)
chr7 (101-199)||(15817830-15817928)
chr7 (101-242)||(8250183-8250324)
chr7 (101-196)||(17910188-17910283)
chr7 (101-196)||(26426794-26426888)
chr7 (250-391)||(20376494-20376634)
chr7 (128-316)||(20146809-20146995)
chr7 (101-157)||(6461677-6461733)
chr7 (137-203)||(16206275-16206341)
chr7 (101-179)||(17151323-17151401)
chr7 (263-302)||(18366037-18366076)
chr7 (118-188)||(17999850-17999920)
chr7 (102-148)||(6210835-6210880)
chr7 (323-388)||(18083396-18083459)
[»] chr2 (3 HSPs)
chr2 (101-302)||(27401846-27402045)
chr2 (238-299)||(34876146-34876207)
chr2 (347-403)||(20718850-20718906)
[»] chr3 (9 HSPs)
chr3 (139-316)||(25487683-25487856)
chr3 (42-156)||(6808644-6808758)
chr3 (117-186)||(19978673-19978742)
chr3 (101-157)||(17385073-17385129)
chr3 (163-202)||(17760693-17760732)
chr3 (163-202)||(19062013-19062052)
chr3 (101-193)||(30084128-30084220)
chr3 (167-203)||(6817527-6817563)
chr3 (130-178)||(7254471-7254519)
[»] chr8 (6 HSPs)
chr8 (101-299)||(17124452-17124649)
chr8 (163-298)||(14400240-14400373)
chr8 (101-179)||(16216040-16216119)
chr8 (128-187)||(24270290-24270349)
chr8 (101-179)||(15062017-15062096)
chr8 (119-196)||(23863524-23863601)
[»] scaffold0417 (1 HSPs)
scaffold0417 (140-299)||(1797-1952)
[»] scaffold0613 (1 HSPs)
scaffold0613 (106-198)||(2915-3007)
[»] scaffold0431 (1 HSPs)
scaffold0431 (117-198)||(13972-14053)
[»] scaffold0014 (1 HSPs)
scaffold0014 (101-178)||(201830-201906)
[»] scaffold1869 (1 HSPs)
scaffold1869 (101-187)||(515-601)
[»] scaffold0338 (1 HSPs)
scaffold0338 (102-179)||(18572-18650)
[»] scaffold0123 (1 HSPs)
scaffold0123 (139-208)||(33054-33123)
[»] chr1 (1 HSPs)
chr1 (117-186)||(11843518-11843587)
[»] scaffold0086 (1 HSPs)
scaffold0086 (131-199)||(11353-11421)
[»] scaffold0035 (1 HSPs)
scaffold0035 (138-201)||(64358-64421)
[»] scaffold0186 (1 HSPs)
scaffold0186 (238-294)||(10744-10801)
[»] scaffold0032 (1 HSPs)
scaffold0032 (245-294)||(80389-80438)
[»] scaffold0097 (1 HSPs)
scaffold0097 (347-403)||(22687-22743)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 18420713 - 18421087
Alignment:
Q  29 aattccatcgtgcatgatttaattaagtgtttagttgatcattgaatacgaatatacggttttgctttcaagttgattatatattatttgtggagtataa 128  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |    
T  18420713 aatttcattgtgcatgatttaattaagtgtttagttgatcattgaatacgaatatacgattttgctttcaagttgattatatattatttgtggaatatta 18420812  T
Q  129 tctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattct 228  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18420813 tctaacctccagtggtcgtttggttgaccgtcggcctatttgcatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtatgct 18420912  T
Q  229 tgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttattttatgtttgat 328  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18420913 tgaggactagctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttattttatgtttgat 18421012  T
Q  329 gagactatcactcagtagtatgttgagattggatattttatttggtgaagtattatgatacatatgatatggctactc 406  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18421013 gagactatcactc---agtatgttgagattggatattttatttggtgaagtattatgatacatatgatatggctactc 18421087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 10116264 - 10116347
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggataga 184  Q
    |||||||||||||||||| ||| | | |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  10116264 ttgattatatattatttgcggaatgttatctaacctccaatggtcgtttggttgaccgtctgcctatttgtatgaatggataga 10116347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 300
Target Start/End: Complemental strand, 11252125 - 11251987
Alignment:
Q  162 gcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttt 261  Q
    |||||||||||||||||  |||| || ||||||||||||||| |||| | || ||||||||||| ||||||||||  ||| || ||| |||| | || ||    
T  11252125 gcctatttgtatgaatgagtagatggtttgcaggattagttgctttg-ctttacttgtgagtatgcttgaggactgtcttggatgctacctcatttcctt 11252027  T
Q  262 tct-ttggagtcttagtttagggctctgattaggatgtcg 300  Q
    | | ||||||| ||||| ||||||||||||||||||||||    
T  11252026 tatgttggagttttagtctagggctctgattaggatgtcg 11251987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 12410304 - 12410412
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatt-a 199  Q
    |||||||||| || | |||||| ||| |||||||| | ||||||||||| ||| |||| | ||||||||||| |||||| |||||| ||||||||||| |    
T  12410304 ttgattatattttttgtgtggaatattatctaacccctagtggtcgtttggttaaccgcctgcctatttgtacgaatggttagacgacttgcaggattga 12410403  T
Q  200 gttgttttg 208  Q
    |||||||||    
T  12410404 gttgttttg 12410412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 11924005 - 11924086
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatt-agttgttttg 208  Q
    |||||||| ||||||||||||| |||||||  | ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  11924005 atctaacccccagtggtcgtttggttgacctgctgcctatttgtatgaataagtagacggcttgcaggattgagttgttttg 11924086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 13933061 - 13933012
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaat 177  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||||||||    
T  13933061 atctaacccccagtggtcgtttggttgaccgcctgcctatttgtatgaat 13933012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 13305495 - 13305551
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgacc 157  Q
    |||||||||||||||||||| | |||||||||| ||| ||||||||||  |||||||    
T  13305495 ttgattatatattatttgtgaaatataatctaatctctagtggtcgttcggttgacc 13305551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 20847178 - 20847122
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgacc 157  Q
    ||||||||||||||||| |||| |||||||||||| ||| ||||||||  |||||||    
T  20847178 ttgattatatattatttttggaatataatctaacccccaatggtcgttcggttgacc 20847122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 20749883 - 20749942
Alignment:
Q  112 ttatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgt 171  Q
    ||||||||||| ||||| |||||||| |||| |||||| |||||||| | ||||||||||    
T  20749883 ttatttgtggaatataaactaacctcgagtgatcgtttggttgaccgcctgcctatttgt 20749942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 20749943 - 20749979
Alignment:
Q  162 gcctatttgtatgaatggatagacggcttgcaggatt 198  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  20749943 gcctatttgtacgaatgggtagacggcttgcaggatt 20749979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 104 - 391
Target Start/End: Original strand, 41377 - 41664
Alignment:
Q  104 attatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttg 203  Q
    |||||||||||||| |||| ||||||||||||   ||||||||||| |||||||| | | |||||||||||||||  |||||| ||| ||||||||||||    
T  41377 attatatattatttatggaatataatctaacccgtagtggtcgtttggttgaccgcctgtctatttgtatgaatgagtagacgtcttacaggattagttg 41476  T
Q  204 ttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggta 303  Q
     |||| | ||||||| |||||| |||||||||| |||||| |||| |||||||||||||||||| | |||||||||||||||||||||||| |||| ||     
T  41477 ctttgcctttgcttgggagtatgcttgaggactagctttggagctacctcgtctcttttctttgaattcttagtttagggctctgattagg-tgtcagtc 41575  T
Q  304 ttttatcatttatttt--atg-tttgatgagactatcactcagtagtatgttgagattggatattt-tatttggtgaagtattatgatacat 391  Q
    |||| |||||||||||  ||| |||||||||| ||||||||   |||||||| |  || || |||| |||||||||| ||||||||||||||    
T  41576 ttttttcatttatttttcatgttttgatgagattatcactc---agtatgttaaagtttgagatttatatttggtgatgtattatgatacat 41664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 101 - 403
Target Start/End: Complemental strand, 37277865 - 37277562
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    |||||||||  |||||| |||| ||| ||||||||  || |||||||||  | || ||||  ||||||||||||||||| ||||||||||||| ||||||    
T  37277865 ttgattatactttatttttggaatattatctaaccatcaatggtcgtttgctggagcgtcttcctatttgtatgaatgggtagacggcttgcacgattag 37277766  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcg 300  Q
    ||| ||||   |||||||||||||| |||| ||||| |||||| | || ||||||||||||| | ||||||||||||||||||  ||||||| |||| |     
T  37277765 ttgctttgcttttgcttgtgagtatgcttgtggactagctttggacctacctcgtctcttttttgtggagtcttagtttagggagctgattaagatgcca 37277666  T
Q  301 gtattttatcattta--ttttatg-tttgatgagactatcactcagtagtatgttgagattggatattt-tatttggtgaagtattatgatacatatgat 396  Q
    ||  |||||||||||  ||| ||| |||||||||| ||| ||||   |||||||||||||| || |||| ||||| |||| |||||||||||||| |||     
T  37277665 gtcgtttatcatttatgtttcatgatttgatgagattattactc---agtatgttgagatttgagatttatatttagtgatgtattatgatacatgtgac 37277569  T
Q  397 atggcta 403  Q
    |||||||    
T  37277568 atggcta 37277562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 37275586 - 37275479
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    |||||||||  |||||| |||| ||| ||||||||  || ||||||||| || || |||| |||||||||||||||||| ||||||||||||| ||||||    
T  37275586 ttgattatactttatttttggaatattatctaaccatcaatggtcgtttggtggagcgtctgcctatttgtatgaatgggtagacggcttgcacgattag 37275487  T
Q  201 ttgttttg 208  Q
    ||| ||||    
T  37275486 ttgctttg 37275479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 34178897 - 34178982
Alignment:
Q  112 ttatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatt 198  Q
    ||||||||||| |||||||||||| ||| |||||||||  |||||| || |||||||| ||||||||||||||||  ||||||||||    
T  34178897 ttatttgtggaatataatctaacc-ccattggtcgtttgcttgaccatctgcctatttctatgaatggatagacgaattgcaggatt 34178982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 20846604 - 20846734
Alignment:
Q  165 tatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttct 264  Q
    |||| ||||| |||| |||||||| |||| ||||| || | ||  | |||||||||||||| ||||||| || | |||| |||| ||| |||| ||||||    
T  20846604 tattcgtatggatgggtagacggcgtgcatgattaattttctttgctttgcttgtgagtatgcttgagg-ctagatttggagctaccttgtct-ttttct 20846701  T
Q  265 ttgg-agtcttagtttagggctctgattaggat 296  Q
    |||| ||||||||||||||||||||||||||||    
T  20846702 ttgggagtcttagtttagggctctgattaggat 20846734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 30191021 - 30191081
Alignment:
Q  117 tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatg 178  Q
    |||||| |||||| ||||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  30191021 tgtggaatataatataacctc-agtggtcgtttggttgaccgtctgcctatttgtacgaatg 30191081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 403
Target Start/End: Complemental strand, 28632 - 28360
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattc 227  Q
    |||||||| ||||||||||||| ||||| || | |||||||||||||||||| || | |||||||||||||||||| |||| | ||||||||||||   |    
T  28632 atctaacc-ccagtggtcgtttggttgatcgcctgcctatttgtatgaatgggtaaatggcttgcaggattagttgctttg-ctttgcttgtgagtccac 28535  T
Q  228 ttgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttatttt-atg-ttt 325  Q
    |||||| ||  ||||| |||| |||| ||||||| ||||||||||||||| |||||||||||| ||| ||||||| |||| || |||||||| ||| |||    
T  28534 ttgagg-ctatctttggagctacctcatctctttgctttggagtcttagtctagggctctgatcagggtgtcggtcttttgtcgtttattttcatgtttt 28436  T
Q  326 gatgagactatcactcagtagtatgttgagattggatattt-tatttggtgaagtattatgatacatatgatatggcta 403  Q
    ||||||| |||||||   ||||||||| ||||| || |||| | ||||||||  ||||||||||||| ||| |||||||    
T  28435 gatgagattatcact---tagtatgttaagatttgagatttatttttggtgatatattatgatacatgtgacatggcta 28360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 128 - 387
Target Start/End: Original strand, 12478496 - 12478751
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattc 227  Q
    ||||| || ||||||||||||| ||||| || | | ||||| |||||||||| |||  |||||||||||||||||| |||||  |||||||||||||| |    
T  12478496 atctagcccccagtggtcgtttggttgaacgcctgtctattcgtatgaatgggtagctggcttgcaggattagttgctttga--ttgcttgtgagtatgc 12478593  T
Q  228 ttgaggacttgctttgaagctgcctcgtctcttttcttt-ggagtcttagtttagggctctgattaggatgtcggtattttatcatttatttt--atgtt 324  Q
     ||||| || ||||||||||| |||| ||| ||| |||| |||||||||||||||||||||||||||| ||||||| || | |||||||||||  ||||     
T  12478594 atgagg-ctagctttgaagctacctcatctttttgctttgggagtcttagtttagggctctgattagg-tgtcggtcttatgtcatttatttttcatgtc 12478691  T
Q  325 tgatgagactatcactcagtagtatgttgagattggatattttatttggtgaagtattatgat 387  Q
    |  ||||||||||||||   || |||||||||||||| ||||  |||||||| ||||||||||    
T  12478692 ttttgagactatcactc---agcatgttgagattggagatttattttggtgatgtattatgat 12478751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 405
Target Start/End: Complemental strand, 24217137 - 24216831
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||| | ||||||||| | | || | ||||||||||||||||||||    
T  24217137 ttgattatatattatttgtggaaaataatctaacccccagtggtcgtttggttgaccgccagcctatttggaagtataggtagacggcttgcaggattag 24217038  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttct--ttggagtcttagtt-tagggctctgattaggatg 297  Q
    | | ||||   ||||||||| |||| |||||||||| |||||| |||| |||| | || ||| |  |||||||| |||||  ||| || |||||||| ||    
T  24217037 tcgctttgcttttgcttgtgggtatgcttgaggactagctttggagctacctcatttcctttatgcttggagtc-tagttgaaggactttgattagggtg 24216939  T
Q  298 tcggtattttatc-atttattttatgt-ttgatgaga-ctatcactcagtagtatgttgagattggatattttatttggtgaagtattatgatacatatg 394  Q
    ||||| |||| ||  ||| |||||||| || ||||||  | ||||||   | |||||||||||| || |||||||||||| | |||||||| ||||||||    
T  24216938 tcggtcttttgtcgtttttttttatgtctttatgagatttgtcactc---attatgttgagatttgagattttatttggttatgtattatggtacatatg 24216842  T
Q  395 atatggctact 405  Q
    | ||| |||||    
T  24216841 acatgactact 24216831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 319
Target Start/End: Complemental strand, 14796746 - 14796533
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    |||||||||  ||||||||||| | | ||||||||||| |||||||||| ||| ||| ||  ||||||| ||||||| | | ||||||||||||||||||    
T  14796746 ttgattatactttatttgtggactgttatctaacctccggtggtcgtttggtttaccctctacctatttttatgaattggtcgacggcttgcaggattag 14796647  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctttgg-agtcttagtttagggctctgattaggatgtc 299  Q
    |||      | ||||| |||||||| |||||||   |  |||  |||| ||| |||||||| |||||| |||||||||||||||||||||||||| ||||    
T  14796646 ttg------ctttgctcgtgagtatgcttgaggctatcttttttagctaccttgtctctttgctttggaagtcttagtttagggctctgattaggttgtc 14796553  T
Q  300 ggtattttatcatttatttt 319  Q
    ||  || | |||||||||||    
T  14796552 ggacttatgtcatttatttt 14796533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 16165785 - 16165911
Alignment:
Q  166 atttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctt 265  Q
    ||||||||||||||||||||| |||| |||||||||  ||||| | ||||||||||||||  | |||| || ||||||||||| |||||| ||||| |||    
T  16165785 atttgtatgaatggatagacgacttgtaggattagtgtttttg-ctttgcttgtgagtatgttggagg-ctggctttgaagctacctcgtttctttgctt 16165882  T
Q  266 tggagtcttagtttagggctctgattagg 294  Q
    |||||||||||| | |||||||| |||||    
T  16165883 tggagtcttagtgtcgggctctgtttagg 16165911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 294
Target Start/End: Original strand, 17827215 - 17827356
Alignment:
Q  151 gttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgc 250  Q
    |||||||||| |||||||||||||||||  |||||  |||||||||||||||  |||||  |||||||||| ||| ||||||| ||  | ||| |||| |    
T  17827215 gttgaccgtctgcctatttgtatgaatgagtagacaacttgcaggattagtttctttga--ttgcttgtgattatgcttgagg-ctaaccttggagctac 17827311  T
Q  251 ctcgtctcttttcttt-ggagtcttagtttagggctctgattagg 294  Q
    ||||||||||| |||| |||||||||| |||||||| ||||||||    
T  17827312 ctcgtctctttgctttgggagtcttagcttagggctttgattagg 17827356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 12484770 - 12484665
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    |||||||||  ||| ||||||| | | |||||||| |  ||||| |||| |||||||||| |||||||| ||||||||| |||||| | |||||||||||    
T  12484770 ttgattatactttacttgtggaatgttatctaaccccatgtggttgtttggttgaccgtctgcctatttttatgaatgggtagacgacatgcaggattag 12484671  T
Q  201 ttgttt 206  Q
    ||||||    
T  12484670 ttgttt 12484665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 12331825 - 12331899
Alignment:
Q  105 ttatatattatt-tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatgg 179  Q
    |||||| ||||| |||||| |||||||||||| |||||||||||||||||||||| |  || ||||||||||||||    
T  12331825 ttatattttattatgtggaatataatctaacc-ccagtggtcgtttagttgaccgcctacccatttgtatgaatgg 12331899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 17912803 - 17912746
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccg 158  Q
    |||||||||||||||||||||| |||| ||||||| | |||||| |||| ||||||||    
T  17912803 ttgattatatattatttgtggaatatattctaacccctagtggttgtttggttgaccg 17912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 30754932 - 30755012
Alignment:
Q  108 tatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggc 188  Q
    |||||| | |||||| ||| |||||||||| |||||||||||  ||||||||| ||||||||| || ||||| ||| ||||    
T  30754932 tatattttatgtggaatattatctaacctcaagtggtcgtttgattgaccgtctgcctatttgaataaatgggtaggcggc 30755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 19841587 - 19841512
Alignment:
Q  129 tctaacctccagtggtcgtttagttgaccgtcggcct-atttgtatgaatggatagacggcttgcaggattagttg 203  Q
    ||||||| ||||||||||||| || ||||||  |||| |||  |||||||||||||||||  ||||||||||||||    
T  19841587 tctaacccccagtggtcgtttggtcgaccgtatgccttattcttatgaatggatagacggtgtgcaggattagttg 19841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 17908069 - 17908035
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacc 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  17908069 ttgattatatattatttgtggaatataatctaacc 17908035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 302
Target Start/End: Original strand, 15010849 - 15011036
Alignment:
Q  112 ttatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgacc 211  Q
    |||||||| || |||||||||||| |||||||| |||| |||||  | | |||||||||||||||||| ||||||| ||||||||||||||| |||| |     
T  15010849 ttatttgtagaatataatctaacc-ccagtggttgtttggttgattgcctgcctatttgtatgaatgggtagacggtttgcaggattagttgctttg-ct 15010946  T
Q  212 ttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttt-tctttggagtcttagtttagggctctgattaggatgtcggt 302  Q
    ||||| |||||||| ||||||| || |||||| |||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  15010947 ttgct-gtgagtatgcttgagg-ctagctttggagctacctcgtccctttgtctttggagtcttagtttagggctatgattaggatgtcggt 15011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 342
Target Start/End: Complemental strand, 17843075 - 17842845
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    ||||||||||||||||||||   | | ||||||||  || ||||||||| ||||||||   |||||| ||||||||||| ||||||||||||||||||||    
T  17843075 ttgattatatattatttgtgagatgttatctaaccctcaatggtcgtttggttgaccgcatgcctatctgtatgaatgggtagacggcttgcaggattag 17842976  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcg 300  Q
    ||||||||      ||| ||      ||||| | || ||||   |||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  17842975 ttgttttg------cttatg------cttgatg-ctagcttctgagctacctcgtctctttgctttggagtcttaatttagggctctgattatgatgtcg 17842889  T
Q  301 gtattttatcatttatttt--atgtttgatgagactatcactca 342  Q
    || ||||||||||||||||   ||||||||||||||||||||||    
T  17842888 gtcttttatcatttatttttcttgtttgatgagactatcactca 17842845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 15817830 - 15817928
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatta 199  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||| | ||||||||||    
T  15817830 ttgattatatattatttgtggaatattatctaacctccagtggtcgtttggttgaccgtctgcctatttgaatgaatgggtagacgacatgcaggatta 15817928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 8250324 - 8250183
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    ||||||||||||||||| |||| ||||||   ||| | ||| ||||||| |||||||| | |||||||||||||||||| ||||| ||||||| ||||||    
T  8250324 ttgattatatattatttttggaatataatgctacccctagtcgtcgtttggttgaccgcctgcctatttgtatgaatgggtagacagcttgcaagattag 8250225  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgcttt 242  Q
    ||| |||| | |||||||||||||| |||||||||| |||||    
T  8250224 ttgctttgtctttgcttgtgagtatgcttgaggactagcttt 8250183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 17910283 - 17910188
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcagga 196  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||    
T  17910283 ttgattatatattatttgtggaatataatctagccccaagtggtcgtttggttgaccgtctgcctatttgtatgaatgagtagacggcttgcagga 17910188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 26426888 - 26426794
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcagga 196  Q
    ||||||||||||| |||||||| ||| ||||||| || ||||||||||| |||||||||| ||||||||||||||||||||| ||||  |||||||    
T  26426888 ttgattatatattttttgtggaatattatctaac-tctagtggtcgtttggttgaccgtctgcctatttgtatgaatggataaacggtgtgcagga 26426794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 20376494 - 20376634
Alignment:
Q  250 cctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttattttatg-tttgatgagactatcactcagtagta 348  Q
    |||||||||||| ||||||||||||| |||||||||||||||||  ||||||  || | || ||||||| ||| |||||||||| || |||||   ||||    
T  20376494 cctcgtctctttgctttggagtcttactttagggctctgattagagtgtcgggtttatgtcgtttatttcatgttttgatgagattaccactc---agta 20376590  T
Q  349 tgttgagattggatattt-tatttggtgaagtattatgatacat 391  Q
    |||||||| | || |||| |||||||||| ||||||||||||||    
T  20376591 tgttgagacttgagatttatatttggtgatgtattatgatacat 20376634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 128 - 316
Target Start/End: Complemental strand, 20146995 - 20146809
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattc 227  Q
    ||||| || ||||||||||||| |||||||||| |||||||| ||||||||| |||||| | ||||| |||||||| |||| | ||||||||||||||      
T  20146995 atctagcccccagtggtcgtttggttgaccgtctgcctatttatatgaatgggtagacgacgtgcagaattagttgctttg-ctttgcttgtgagtatgt 20146897  T
Q  228 ttgaggacttgctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttat 316  Q
    | ||||  |  ||||| ||||  || || |||||||| |||||| ||||| | ||||| ||||||||||||| || |||| | ||||||    
T  20146896 tggagg-ttatctttggagctatcttgtttcttttctgtggagtattagtgtcgggctttgattaggatgtctgtgttttgttatttat 20146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 6461677 - 6461733
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgacc 157  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||    
T  6461677 ttgattatatattatttgtggaatataatctaacctctagtggtcgttcggttgacc 6461733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 16206341 - 16206275
Alignment:
Q  137 ccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttg 203  Q
    ||||||||||||   ||||||| | |||||||||||||||||| ||||| |||||||||||||||||    
T  16206341 ccagtggtcgttcgattgaccgcctgcctatttgtatgaatgggtagacagcttgcaggattagttg 16206275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 17151323 - 17151401
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatgg 179  Q
    ||||||||||||||||| |||| |||||||||| | | ||||||||||| |||| ||| | ||||||||| ||||||||    
T  17151323 ttgattatatattatttatggaatataatctaaaccctagtggtcgtttggttggccggctgcctatttgaatgaatgg 17151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 18366037 - 18366076
Alignment:
Q  263 ctttggagtcttagtttagggctctgattaggatgtcggt 302  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18366037 ctttggagtcttagattagggctctgattaggatgtcggt 18366076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 17999850 - 17999920
Alignment:
Q  118 gtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggc 188  Q
    ||||| ||| ||||||||  |||||||||||| ||||| || | |||||||||||||||||| ||||||||    
T  17999850 gtggaatattatctaaccctcagtggtcgtttggttgatcgcctgcctatttgtatgaatgggtagacggc 17999920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 6210835 - 6210880
Alignment:
Q  102 tgattatatattatttgtggagtataatctaacctccagtggtcgtt 148  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  6210835 tgattatatattatttgtggaatataatctaaac-ccagtggtcgtt 6210880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 18083396 - 18083459
Alignment:
Q  323 tttgatgagactatcactcagtagtatgttgagattggatattt-tatttggtgaagtattatgata 388  Q
    |||||||||| ||||||||   |||||||||||||| || |||| |||||||||| |||||||||||    
T  18083396 tttgatgagattatcactc---agtatgttgagatttgagatttatatttggtgatgtattatgata 18083459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 27402045 - 27401846
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctcc-agtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatta 199  Q
    |||||||||| ||||||||||| | | |||||||| || ||||||||||| |||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  27402045 ttgattatattttatttgtggattgttatctaaccccccagtggtcgtttggttgaccgcctgcctatttgtatgaatgggtagacagcttgcaggatta 27401946  T
Q  200 gttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttcttt-ggagtcttagtttagggctctgattaggatgt 298  Q
    |||| ||||  |||  | || ||| ||||||||| || | |||| |||| |||||| ||||| |||| ||||||||||||||||||||| ||||||||||    
T  27401945 gttgctttg--ctttatggtcagttttcttgagg-ctagatttggagctacctcgt-tctttgctttgggagtcttagtttagggctcttattaggatgt 27401850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 34876207 - 34876146
Alignment:
Q  238 gctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtc 299  Q
    |||||| |||| |||||| | |||  ||||||||||||| ||||||||||||||||||||||    
T  34876207 gctttggagctacctcgtttatttgatttggagtcttagattagggctctgattaggatgtc 34876146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 20718906 - 20718850
Alignment:
Q  347 tatgttgagattggatattttatttggtgaagtattatgatacatatgatatggcta 403  Q
    ||||||||||||||| |||||||||||||  |  ||||||||||| ||| |||||||    
T  20718906 tatgttgagattggagattttatttggtgttgcgttatgatacatgtgacatggcta 20718850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 25487683 - 25487856
Alignment:
Q  139 agtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttg 238  Q
    |||| |||||| ||||||||||  | ||||||| ||||||  |||||| |||||| ||||||||||||||  ||||||||||||||| ||||||| || |    
T  25487683 agtgatcgtttggttgaccgtctacgtatttgtttgaatgagtagacgacttgcatgattagttgttttg--cttgcttgtgagtatgcttgagg-ctag 25487779  T
Q  239 ctttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtcggtattttatcatttat 316  Q
    ||| |||||  |||||||||||| |||| |||||||| ||||||||||||||||||||||| || ||||||| |||||    
T  25487780 ctt-gaagcaacctcgtctctttgctttagagtcttaatttagggctctgattaggatgtcagttttttatcgtttat 25487856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 6808758 - 6808644
Alignment:
Q  42 atgatttaattaagtgtttagttgatcattgaatacgaatatacggttttgctttcaagttgattatatattatttgtggagtataatctaacctccagt 141  Q
    |||||||||||||||||||| |||||||||||||| ||||| || | |||| |||||||||||| |||||||||||||||| |||  ||||||| | |||    
T  6808758 atgatttaattaagtgtttaattgatcattgaatatgaatacactgctttgttttcaagttgataatatattatttgtggaatattgtctaacccctagt 6808659  T
Q  142 ggtcgtttagttgac 156  Q
    |||||||| ||||||    
T  6808658 ggtcgtttggttgac 6808644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 19978673 - 19978742
Alignment:
Q  117 tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacg 186  Q
    |||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||    
T  19978673 tgtggaatataatataacctccagtggtcgtttggttgaccgtctgcctatttgtatgaattggtagacg 19978742  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 17385129 - 17385073
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgacc 157  Q
    |||||||||||||||||||||| |||||| ||||| | ||||||||||  |||||||    
T  17385129 ttgattatatattatttgtggaatataatttaacccctagtggtcgttcggttgacc 17385073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 17760693 - 17760732
Alignment:
Q  163 cctatttgtatgaatggatagacggcttgcaggattagtt 202  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  17760693 cctatttgtatgaatgggtagacggcgtgcaggattagtt 17760732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 19062013 - 19062052
Alignment:
Q  163 cctatttgtatgaatggatagacggcttgcaggattagtt 202  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  19062013 cctatttgtatgaatgggtagacggcgtgcaggattagtt 19062052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 30084128 - 30084220
Alignment:
Q  101 ttgattatatattatt-tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgca 193  Q
    |||||||||  ||||| |||||| ||| |||||||||  ||||||||||| |||||| | | |||||||| ||||||||| |||||||| ||||    
T  30084128 ttgattatactttattatgtggaatattatctaacctt-agtggtcgtttcgttgactgcctgcctatttttatgaatgggtagacggcgtgca 30084220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 6817527 - 6817563
Alignment:
Q  167 tttgtatgaatggatagacggcttgcaggattagttg 203  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  6817527 tttgtatgaatgggtagacggcgtgcaggattagttg 6817563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 7254519 - 7254471
Alignment:
Q  130 ctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatg 178  Q
    |||||| ||||||||||||| |||||||| |  ||||||||||||||||    
T  7254519 ctaacccccagtggtcgtttggttgaccgcctacctatttgtatgaatg 7254471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 101 - 299
Target Start/End: Complemental strand, 17124649 - 17124452
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattag 200  Q
    |||||||||||||| ||||||| | | |||||||| | ||| ||| ||| |||||| ||| |||||||||||||||||| |||||||| ||||||||||     
T  17124649 ttgattatatattacttgtggaatgttatctaacccctagttgtcatttggttgactgtctgcctatttgtatgaatgggtagacggcgtgcaggattaa 17124550  T
Q  201 ttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctcttttctttggagtct-tagtt-tagggctctgattaggatgt 298  Q
    |||||||| | |||||| ||||||| ||||||| || |||||| |||| |||||| | | ||| ||||||||| ||||| ||||||||||||||||||||    
T  17124549 ttgttttg-ctttgcttatgagtatgcttgagg-ctagctttggagctacctcgt-tttgttccttggagtctatagttgtagggctctgattaggatgt 17124453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 14400240 - 14400373
Alignment:
Q  163 cctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgctttgaagctgcctcgtctctttt 262  Q
    |||||||||||| |||| |||||| | |||| |||||||| ||||| | |||||||||||||| || |||| || |||||| |||| |||||| |||||     
T  14400240 cctatttgtatggatgggtagacgacgtgcaagattagttcttttg-ctttgcttgtgagtatgctggagg-ctagctttggagctacctcgtttctttg 14400337  T
Q  263 ctttggagtcttagtttagggctctgattaggatgt 298  Q
    |||||||||||||||   |||||||||||| |||||    
T  14400338 ctttggagtcttagtgccgggctctgattatgatgt 14400373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 16216119 - 16216040
Alignment:
Q  101 ttgattatatattatt-tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatgg 179  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||| || | ||  ||||||||||||||    
T  16216119 ttgattatatgttattatgtggaatataatctaacctccagtggtcgtttggttgatcgcctgctcatttgtatgaatgg 16216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 24270349 - 24270290
Alignment:
Q  128 atctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacgg 187  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||| |||||| |||||||    
T  24270349 atctaacccccagtggtcgtttggttgaccgcctgcctatttgtacgaatggttagacgg 24270290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 15062096 - 15062017
Alignment:
Q  101 ttgattatatattatt-tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatgg 179  Q
    |||||||||| ||||| |||||| ||| ||||||||| ||||||| |||| |||||||| |  || ||||||||||||||    
T  15062096 ttgattatattttattatgtggaatattatctaaccttcagtggttgtttggttgaccgcctacccatttgtatgaatgg 15062017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 23863601 - 23863524
Alignment:
Q  119 tggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcagga 196  Q
    |||| ||| |||||||||||| ||||||||| |||||| | | | |||||| ||||||||  || |||||||||||||    
T  23863601 tggaatattatctaacctccaatggtcgtttggttgactgcctggctatttctatgaatgagtatacggcttgcagga 23863524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 1952 - 1797
Alignment:
Q  140 gtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttgaccttgcttgtgagtattcttgaggacttgc 239  Q
    |||||||||| |||||||||| ||| ||| |||||||||| |||||| |||||||||||||||| |||||  |||||||||||||| ||||||| || ||    
T  1952 gtggtcgtttggttgaccgtctgccaattcgtatgaatgggtagacgacttgcaggattagttgctttga--ttgcttgtgagtatgcttgagg-ctagc 1856  T
Q  240 tttgaagctgcctcgtctcttttctttggagtcttagtttagggctctgattaggatgtc 299  Q
    |||| ||||  ||||| | ||| ||||||||||||||| | ||||||| |||||||||||    
T  1855 tttggagctaactcgt-tttttgctttggagtcttagtgtcgggctctaattaggatgtc 1797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 2915 - 3007
Alignment:
Q  106 tatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatt 198  Q
    ||||||||||||||||| |||||||||| | ||||||||| ||| |||||||| |  ||||||||||||||||| |||||||| |||||||||    
T  2915 tatatattatttgtggaatataatctaatccccagtggtcatttggttgaccgcctacctatttgtatgaatgggtagacggcatgcaggatt 3007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 13972 - 14053
Alignment:
Q  117 tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatt 198  Q
    |||||| ||| |||||||| | ||||||| ||| |||||| | | |||||||||| ||||||| ||||||||||||||||||    
T  13972 tgtggaatattatctaacccctagtggtcatttggttgactgcctgcctatttgtttgaatgggtagacggcttgcaggatt 14053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 201906 - 201830
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatg 178  Q
    ||||||||||||||||| |||| ||  |||||||| ||||||||||||| |||||||  | |||||||||||||||||    
T  201906 ttgattatatattatttatggaatactatctaacc-ccagtggtcgtttggttgaccacctgcctatttgtatgaatg 201830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 601 - 515
Alignment:
Q  101 ttgattatatattatttgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacgg 187  Q
    |||||||||| ||||||||||| | | || |||||  |||||||| ||| ||||||  || |||||||||||||||||| |||||||    
T  601 ttgattatattttatttgtggaatgttatataaccctcagtggtcatttggttgactatctgcctatttgtatgaatgggtagacgg 515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 18572 - 18650
Alignment:
Q  102 tgattatatattatt-tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatgg 179  Q
    ||||||||| ||||| |||||| ||| ||||||||  |||||||||||| ||||||||||  || ||||||||||||||    
T  18572 tgattatattttattatgtggaatattatctaaccctcagtggtcgtttggttgaccgtctacccatttgtatgaatgg 18650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 33123 - 33054
Alignment:
Q  139 agtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagttgttttg 208  Q
    |||| |||||| |||||||| | |||||||||||||||||| |||||||| || |||||| |||| ||||    
T  33123 agtgttcgtttcgttgaccgcctgcctatttgtatgaatgggtagacggcgtgtaggatttgttgctttg 33054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 11843587 - 11843518
Alignment:
Q  117 tgtggagtataatctaacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacg 186  Q
    |||||| |||||||||||| | ||||||||||| |||||||  | |||||||||||| ||||| ||||||    
T  11843587 tgtggaatataatctaacccctagtggtcgtttggttgaccccctgcctatttgtattaatgggtagacg 11843518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 11353 - 11421
Alignment:
Q  131 taacctccagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggatta 199  Q
    ||||| |||||| |||||| |||||||  | |||||||| ||||||||| || ||||||||||||||||    
T  11353 taacccccagtgatcgtttggttgaccacctgcctatttatatgaatgggtatacggcttgcaggatta 11421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 64358 - 64421
Alignment:
Q  138 cagtggtcgtttagttgaccgtcggcctatttgtatgaatggatagacggcttgcaggattagt 201  Q
    |||||||||||| |||||||| |  ||||||||||||||||| ||||| || ||||||| ||||    
T  64358 cagtggtcgtttggttgaccgcctacctatttgtatgaatgggtagacagcgtgcaggaatagt 64421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 10801 - 10744
Alignment:
Q  238 gctttgaagctgcctcgtctcttttcttt-ggagtcttagtttagggctctgattagg 294  Q
    |||||| |||| ||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  10801 gctttggagctacctcgtctctttgttttaggagtcttagtttagggttctgattagg 10744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 80438 - 80389
Alignment:
Q  245 agctgcctcgtctcttttctttggagtcttagtttagggctctgattagg 294  Q
    |||| ||||| || ||| ||| ||||||||||||||||||||||||||||    
T  80438 agctacctcgactttttccttgggagtcttagtttagggctctgattagg 80389  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 22743 - 22687
Alignment:
Q  347 tatgttgagattggatattttatttggtgaagtattatgatacatatgatatggcta 403  Q
    ||||||||||||||| |||||||||||||  |  ||||||||||| ||| |||||||    
T  22743 tatgttgagattggagattttatttggtgttgcgttatgatacatgtgacatggcta 22687  T

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