View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_14 (Length: 435)
Name: NF0915_low_14
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 10604467 - 10604142
Alignment:
| Q |
1 |
acattcaacatagagcatagcattggnnnnnnnngcttacaatcatcatttgatgcttttgttactacaacaactaacaaataactgaaaaggaagagta |
100 |
Q |
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| T |
10604467 |
acattcaacatagagcatagcattggaaaaaaaagcttacaatcatcatttgatgtttttgttactacaacaactaacaaataactgaaaaggaagagta |
10604368 |
T |
|
| Q |
101 |
ggaacactagagttctttcacccatgatcaacctaaaagatgacactttcaaatgctgaataaaaagattacaatcctcattttattccattacatcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10604367 |
ggaacactagagttctttcacccatgatcaacctaaaa-atgacactttcaaatgctgaataaaaagattacaatcctcattttattccattacatcaat |
10604269 |
T |
|
| Q |
201 |
gaagaaaaagtcaacatagttaagaattctttaatttatccagtgaccatttcatttagtataagatcaaataaataaacaattacatagtaatggagaa |
300 |
Q |
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| T |
10604268 |
ggagaaaaagtcaacatagttaagaattctttaatttatccagtgaccatttcatttagtataagatcaaataaataaacaattacatagtaatggagaa |
10604169 |
T |
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| Q |
301 |
ttacaactagcaaacaacgatgatgat |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10604168 |
ttacaactagcaaacaacgatgatgat |
10604142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 34899903 - 34899975
Alignment:
| Q |
358 |
gagatgaactaaagagagacgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
430 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899903 |
gagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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