View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_20 (Length: 348)
Name: NF0915_low_20
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 22080501 - 22080312
Alignment:
| Q |
74 |
tgagatgaagaaattttaggagaataagcgggatgctgaagctaagctggtagagcttaataacaattatgattaaatggcgaggcttggaagggccccc |
173 |
Q |
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| T |
22080501 |
tgagaagaagaaagtttaggagaataagcgggatgctgaagctaagctgttagagcttaataacaattatgattaaatggcgaggcttggaagggccccc |
22080402 |
T |
|
| Q |
174 |
aaaatattactgagttacaggaggaggtacaaaatgctaagatgaatgttgttgagaatatagaaaaggggtttgatcgagccaacgatc |
263 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22080401 |
aaagtattactgagttacaggaggaggtacaaaatgctaagatgaatgttgctgagaatatagaaaaggggtttgatcgagccaacgatc |
22080312 |
T |
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