View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_21 (Length: 342)
Name: NF0915_low_21
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 31131012 - 31131258
Alignment:
| Q |
17 |
tggaaataatcatttttgacttttttgagtggaaaataaatagactttaataattgtcctgaagtatttattgacttttacgagtgaaaaagagatcgtc |
116 |
Q |
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| T |
31131012 |
tggaaataatcatttttgacttttttgagtggaaaatcagtagactttaataattgtcttgaactatttattgacttttacgagtgagaaagagatcgtc |
31131111 |
T |
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| Q |
117 |
-------------attgaagtatcttacgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattctt |
203 |
Q |
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| T |
31131112 |
atggatgacaccgattgaagtatcttacgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactcttgtttcgttcctattctt |
31131211 |
T |
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| Q |
204 |
agccacnnnnnnncaatgcaaaacaccctccaaaatccccaactcat |
250 |
Q |
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| T |
31131212 |
aaccataaaaaaacaatgcaaaacactctccaaaatccccaactcat |
31131258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 31126409 - 31126493
Alignment:
| Q |
124 |
tatcttacgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattcttagcca |
208 |
Q |
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| T |
31126409 |
tatcttacgtaccaaatggaactcgaaatattggtttctttcttactttactctgtaactctcgtgtcgttcttattcttagcca |
31126493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 31077102 - 31077176
Alignment:
| Q |
135 |
ccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattcttagccac |
209 |
Q |
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| T |
31077102 |
ccaaatggaactcgaaactttgctttctttgttacttttctcagcaccactcgtttggttcttattcttagccac |
31077176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 31125880 - 31125933
Alignment:
| Q |
42 |
tgagtggaaaataaatagactttaataattgtcctgaagtatttattgactttt |
95 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||||| |||||| |
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| T |
31125880 |
tgagtggaaaataaatagactttaataattgtcttaaacaatttatttactttt |
31125933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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