View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_22 (Length: 342)

Name: NF0915_low_22
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_22
NF0915_low_22
[»] chr7 (1 HSPs)
chr7 (9-313)||(27683197-27683491)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 27683197 - 27683491
Alignment:
Q  9 caataatatattaccaaataaaggtgtgctaacttactcttatacactagagaatatatgaaatgattttgaagatgaatttcgcagagttttaaatcag 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  27683197 caataatatattaccaaataaaggtttgctaacttactcttatacactagagaatatatgaaatgattttgaagatga----------gttttaaatcag 27683286  T
Q  109 agaagcatccaagttttttcttcatgaatgattcaaacataaaggtgtattgattcatgaataaacacacccaaacattgtgtgaaaaatgaatatgccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27683287 agaagcatccaagttttttcttcatgaatgattcaaacataaaggtgtattgattcatgaataaacacacccaaacattgtgtgaaaaatgaatatgccc 27683386  T
Q  209 catcaaacaaattttataaccagcatggtccaagttttacgcaatttaggtcattcaaacttgtggtgatgagttcgatttctaatgagcggggagtagt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  27683387 catcaaacaaattttataaccagcatggtccaagttttacgcaatttaggtcattcaaacgtgtggtgatgagttcgatttctgatgagcgtggagtagt 27683486  T

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