View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_25 (Length: 331)

Name: NF0915_low_25
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_25
NF0915_low_25
[»] chr8 (4 HSPs)
chr8 (81-196)||(6868887-6869002)
chr8 (237-274)||(15601322-15601359)
chr8 (238-274)||(3416762-3416798)
chr8 (238-274)||(36573632-36573668)
[»] chr1 (6 HSPs)
chr1 (81-141)||(47149668-47149725)
chr1 (237-274)||(13534058-13534095)
chr1 (238-274)||(22388431-22388467)
chr1 (238-274)||(31058645-31058681)
chr1 (238-274)||(40116922-40116958)
chr1 (238-274)||(40315550-40315586)
[»] chr7 (1 HSPs)
chr7 (237-274)||(30023221-30023258)
[»] scaffold0113 (1 HSPs)
scaffold0113 (238-274)||(12558-12594)
[»] chr5 (1 HSPs)
chr5 (238-274)||(42546280-42546316)
[»] chr4 (3 HSPs)
chr4 (238-274)||(12594668-12594704)
chr4 (238-274)||(32465563-32465599)
chr4 (238-274)||(42260273-42260309)
[»] chr2 (2 HSPs)
chr2 (238-274)||(6730507-6730543)
chr2 (238-274)||(20207123-20207159)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 6868887 - 6869002
Alignment:
Q  81 atgaaacagagctaagtcggagaatttgcagttaaactatctccgacgagtatataaacttattctttcttgtaatatatagggtgatattttaaaaagg 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6868887 atgaaacagagctaaatcggagaatttgcagttaaactatctccgacgagtatataaacttattctttcttgtaatatacagggtgatattttaaaaagg 6868986  T
Q  181 atgaaatatgcaatta 196  Q
    | ||||||||||||||    
T  6868987 aggaaatatgcaatta 6869002  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 15601322 - 15601359
Alignment:
Q  237 attaattaatttaccctctccgtcaaattcttatgtta 274  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  15601322 attaatcaatttaccccctccgtcaaattcttatgtta 15601359  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 3416762 - 3416798
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  3416762 ttaatcaatttaccctctccttcaaattcttatgtta 3416798  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 36573668 - 36573632
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  36573668 ttaatcaatttaccctctccgtcaaattcttctgtta 36573632  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 47149725 - 47149668
Alignment:
Q  81 atgaaacagagctaagtcggagaatttgcagttaaactatctccgacgagtatataaactt 141  Q
    ||||||||||||||| ||||| ||||||   |||| |||||||||||||||||||||||||    
T  47149725 atgaaacagagctaaatcggaaaatttg---ttaagctatctccgacgagtatataaactt 47149668  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 13534095 - 13534058
Alignment:
Q  237 attaattaatttaccctctccgtcaaattcttatgtta 274  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  13534095 attaatcaatttaccccctccgtcaaattcttatgtta 13534058  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 22388431 - 22388467
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  22388431 ttaatcaatttaccctctccgtcaaattcttctgtta 22388467  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 31058681 - 31058645
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  31058681 ttaatcaatttaccctctccgtcaaattcttctgtta 31058645  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 40116958 - 40116922
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  40116958 ttaatcaatttacccactccgtcaaattcttatgtta 40116922  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 40315586 - 40315550
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  40315586 ttaattaatttaccccctccgtcaaattcttttgtta 40315550  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 30023258 - 30023221
Alignment:
Q  237 attaattaatttaccctctccgtcaaattcttatgtta 274  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  30023258 attaatcaatttaccctctccgtcaaattcttctgtta 30023221  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 12558 - 12594
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  12558 ttaatcaatttaccctctccgtcaaattcttctgtta 12594  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 42546280 - 42546316
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  42546280 ttaatcaatttaccctctccgtcaaattcttctgtta 42546316  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 12594668 - 12594704
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  12594668 ttaatcaatttaccctctccgtcaaattcttctgtta 12594704  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 32465599 - 32465563
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  32465599 ttaatcaatttaccccctccgtcaaattcttatgtta 32465563  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 42260309 - 42260273
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  42260309 ttaatcaatttaccctctccgtcaaattcttctgtta 42260273  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 6730507 - 6730543
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  6730507 ttaatcaatttaccctctccttcaaattcttatgtta 6730543  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 20207123 - 20207159
Alignment:
Q  238 ttaattaatttaccctctccgtcaaattcttatgtta 274  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  20207123 ttaatcaatttaccctctctgtcaaattcttatgtta 20207159  T

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