View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_low_26 (Length: 329)
Name: NF0915_low_26
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 22919537 - 22919669
Alignment:
| Q |
120 |
gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22919537 |
gggactcatatttttagtcctttttctcaatcttaacagatttgagcttgacagtctttgtagcagacacatctccagcatcagcagaggcagaggaggt |
22919636 |
T |
|
| Q |
220 |
gaaatccatcaaataattttcggcagacctttt |
252 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |
|
|
| T |
22919637 |
gaaatccatcaaaacattttcagcggacctttt |
22919669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 22919426 - 22919485
Alignment:
| Q |
9 |
gaacaatattaaaataaaaaattgagttgtaagctcaatattaaccaaagttttggaatt |
68 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22919426 |
gaacaaaattaaaataaaaaattgagttgtaagctcaatattaaccaaagttttggaatt |
22919485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 3523673 - 3523785
Alignment:
| Q |
120 |
gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt |
219 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3523673 |
gggactcatagtcttagtcctttttctcaatcttaacacatttgagcttgacagtctttatagcagacgcatctccagcatcagcagaggcagagggggt |
3523772 |
T |
|
| Q |
220 |
gaaatccatcaaa |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3523773 |
gaaatccatcaaa |
3523785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 3523577 - 3523621
Alignment:
| Q |
24 |
aaaaaattgagttgtaagctcaatattaaccaaagttttggaatt |
68 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3523577 |
aaaaaattgagttgtacgctcaatattaaccaaagttttggaatt |
3523621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 18004457 - 18004399
Alignment:
| Q |
145 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcag |
203 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| | |||||||||||||| |
|
|
| T |
18004457 |
ctcaatcttaacagatttgagcttgacagactttgtagcagagaaatctccagcatcag |
18004399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 18004347 - 18004294
Alignment:
| Q |
154 |
aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
207 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| |||||||||||||||||||| |
|
|
| T |
18004347 |
aacagatttgagcttgacaagcttagtagcagagacatctccagcatcagcaga |
18004294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 16804217 - 16804155
Alignment:
| Q |
145 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
207 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||| ||| | |||||||||||||||||| |
|
|
| T |
16804217 |
ctcaatcttaacatatttgagcttgacaggctttgtagtagagaaatctccagcatcagcaga |
16804155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 16804106 - 16804053
Alignment:
| Q |
154 |
aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
207 |
Q |
| |
|
||||||||||||||||| || ||| |||||||| |||||| || |||||||||| |
|
|
| T |
16804106 |
aacagatttgagcttgacaggcttagtagcagagacatctacaacatcagcaga |
16804053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 47735519 - 47735457
Alignment:
| Q |
145 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||| | ||||||||||||| |||| |
|
|
| T |
47735519 |
ctcaatcttaacagatttgagcttgacaggcttcgtagcagagaaatctccagcatcaacaga |
47735457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 559 times since January 2019
Visitors: 6696