View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_27 (Length: 326)
Name: NF0915_low_27
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_27 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 42769527 - 42769852
Alignment:
| Q |
1 |
atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769527 |
atagcaatactgctttcataaaattctacgggatcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaa |
42769626 |
T |
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| Q |
101 |
tgtccgcttcatagcatccaccgcctacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag |
200 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769627 |
tgtctgcttcatagcatccaccgcccacagcaagcggtggccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctag |
42769726 |
T |
|
| Q |
201 |
gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769727 |
gccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgtt |
42769826 |
T |
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| Q |
301 |
acatttgtggatttaccagcatctgc |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42769827 |
acatttgtggatttaccagcatctgc |
42769852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 42743797 - 42743963
Alignment:
| Q |
141 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
240 |
Q |
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| T |
42743797 |
ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct |
42743896 |
T |
|
| Q |
241 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg |
307 |
Q |
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| T |
42743897 |
ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttg |
42743963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 42753156 - 42753322
Alignment:
| Q |
141 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
240 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42753156 |
ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct |
42753255 |
T |
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| Q |
241 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg |
307 |
Q |
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|| || |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||| |
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| T |
42753256 |
ccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttg |
42753322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 42717169 - 42717320
Alignment:
| Q |
141 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
240 |
Q |
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|||||| ||||||||||| |||||||||| || || |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
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| T |
42717169 |
ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcct |
42717268 |
T |
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| Q |
241 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactat |
292 |
Q |
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|| || |||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
42717269 |
ccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactat |
42717320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 42762778 - 42762930
Alignment:
| Q |
141 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
240 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42762778 |
ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct |
42762877 |
T |
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| Q |
241 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatg |
293 |
Q |
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|| || ||||||||||| |||||||||||||| ||| || ||||||||||| |
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| T |
42762878 |
ccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtgcactatg |
42762930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 141 - 307
Target Start/End: Complemental strand, 42734716 - 42734550
Alignment:
| Q |
141 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
240 |
Q |
| |
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|||||| ||||||||||| | ||||||||| || || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
42734716 |
ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct |
42734617 |
T |
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| Q |
241 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg |
307 |
Q |
| |
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|| || |||||||||||||||||||||||||| || ||| || ||||||| ||||||| |||||| |
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| T |
42734616 |
ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttg |
42734550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 42762694 - 42762775
Alignment:
| Q |
39 |
acccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca |
120 |
Q |
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||||| |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||||||||| || ||||| |||||| |
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| T |
42762694 |
acccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca |
42762775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 42734806 - 42734726
Alignment:
| Q |
33 |
atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcata |
113 |
Q |
| |
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|||||||| || |||| | |||| |||||||||||| ||| |||||||||||| |||||||||||||| || || ||||| |
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| T |
42734806 |
atcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata |
42734726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 42717079 - 42717147
Alignment:
| Q |
33 |
atcaccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaat |
101 |
Q |
| |
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||||||||||| |||| | |||| ||| || ||||| ||| |||||||||||| |||||||||||||| |
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| T |
42717079 |
atcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaat |
42717147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 23040670 - 23040511
Alignment:
| Q |
148 |
accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg |
247 |
Q |
| |
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||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||| | | |
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| T |
23040670 |
accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacag |
23040571 |
T |
|
| Q |
248 |
ttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |
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| T |
23040570 |
ttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttcatttg |
23040511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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