View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_29 (Length: 324)

Name: NF0915_low_29
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_29
NF0915_low_29
[»] chr5 (7 HSPs)
chr5 (30-160)||(41100569-41100696)
chr5 (284-315)||(11313965-11313996)
chr5 (284-315)||(16528763-16528794)
chr5 (284-315)||(16528945-16528976)
chr5 (284-315)||(16529121-16529152)
chr5 (284-315)||(41093158-41093189)
chr5 (287-315)||(41092978-41093006)
[»] scaffold1155 (1 HSPs)
scaffold1155 (284-317)||(1035-1068)
[»] scaffold0345 (1 HSPs)
scaffold0345 (284-317)||(9149-9182)
[»] scaffold0105 (1 HSPs)
scaffold0105 (284-317)||(29798-29831)
[»] chr3 (3 HSPs)
chr3 (284-316)||(11454367-11454399)
chr3 (284-315)||(46451238-46451269)
chr3 (284-312)||(11454548-11454576)
[»] chr8 (9 HSPs)
chr8 (284-315)||(604417-604448)
chr8 (284-315)||(604764-604795)
chr8 (284-315)||(37197817-37197848)
chr8 (284-315)||(37198001-37198032)
chr8 (284-315)||(44430053-44430084)
chr8 (284-315)||(44430404-44430435)
chr8 (284-315)||(44433788-44433819)
chr8 (284-315)||(44434139-44434170)
chr8 (284-312)||(44429383-44429411)
[»] chr7 (1 HSPs)
chr7 (284-315)||(48641104-48641135)
[»] chr6 (2 HSPs)
chr6 (284-315)||(25068126-25068157)
chr6 (287-315)||(23622207-23622235)
[»] chr4 (1 HSPs)
chr4 (284-315)||(21585467-21585498)
[»] chr2 (6 HSPs)
chr2 (284-315)||(5001282-5001313)
chr2 (284-315)||(5012952-5012983)
chr2 (284-315)||(44543592-44543623)
chr2 (284-312)||(5001436-5001464)
chr2 (287-315)||(5001610-5001638)
chr2 (284-312)||(5013106-5013134)
[»] chr1 (5 HSPs)
chr1 (284-315)||(5428919-5428950)
chr1 (284-315)||(28950076-28950107)
chr1 (284-315)||(51113892-51113923)
chr1 (287-315)||(24595224-24595252)
chr1 (287-315)||(27296326-27296354)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 41100696 - 41100569
Alignment:
Q  30 aaaaagcgaagacgcgggagataattatgcagtactactgtactgccagtcagtagagtagtttcctaacaataaaattaaataaatcaagaagtaaaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||| ||||    
T  41100696 aaaaagcgaagacgcgggagataattatgcagtactactgtactgccagtcagtagagtagtttgctaacaataaaattaaataaatc---aagttaaaa 41100600  T
Q  130 tatgttttatctctataaataatatttttta 160  Q
    |||||||||||||||||||||||||||||||    
T  41100599 tatgttttatctctataaataatatttttta 41100569  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 11313965 - 11313996
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  11313965 ttctacacttatccttatttattaattttgtt 11313996  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 16528763 - 16528794
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  16528763 ttctacacttatccttatttattaattttgtt 16528794  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 16528945 - 16528976
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  16528945 ttctacacttatccttatttattaattttgtt 16528976  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 16529121 - 16529152
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  16529121 ttctacacttatccttatttattaattttgtt 16529152  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 41093189 - 41093158
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  41093189 ttctacacttatccttatttattaattttgtt 41093158  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 41093006 - 41092978
Alignment:
Q  287 tacacttatccttatttattaattttgtt 315  Q
    |||||||||||||||||||||||||||||    
T  41093006 tacacttatccttatttattaattttgtt 41092978  T

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Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 1068 - 1035
Alignment:
Q  284 ttctacacttatccttatttattaattttgttgg 317  Q
    ||||||||||||||||||||||||||||||||||    
T  1068 ttctacacttatccttatttattaattttgttgg 1035  T

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Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 9149 - 9182
Alignment:
Q  284 ttctacacttatccttatttattaattttgttgg 317  Q
    ||||||||||||||||||||||||||||||||||    
T  9149 ttctacacttatccttatttattaattttgttgg 9182  T

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Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 29831 - 29798
Alignment:
Q  284 ttctacacttatccttatttattaattttgttgg 317  Q
    ||||||||||||||||||||||||||||||||||    
T  29831 ttctacacttatccttatttattaattttgttgg 29798  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 11454367 - 11454399
Alignment:
Q  284 ttctacacttatccttatttattaattttgttg 316  Q
    |||||||||||||||||||||||||||||||||    
T  11454367 ttctacacttatccttatttattaattttgttg 11454399  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 46451238 - 46451269
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  46451238 ttctacacttatccttatttattaattttgtt 46451269  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 11454548 - 11454576
Alignment:
Q  284 ttctacacttatccttatttattaatttt 312  Q
    |||||||||||||||||||||||||||||    
T  11454548 ttctacacttatccttatttattaatttt 11454576  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 604448 - 604417
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  604448 ttctacacttatccttatttattaattttgtt 604417  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 604795 - 604764
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  604795 ttctacacttatccttatttattaattttgtt 604764  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 37197848 - 37197817
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  37197848 ttctacacttatccttatttattaattttgtt 37197817  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 37198032 - 37198001
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  37198032 ttctacacttatccttatttattaattttgtt 37198001  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 44430053 - 44430084
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  44430053 ttctacacttatccttatttattaattttgtt 44430084  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 44430404 - 44430435
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  44430404 ttctacacttatccttatttattaattttgtt 44430435  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 44433788 - 44433819
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  44433788 ttctacacttatccttatttattaattttgtt 44433819  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 44434139 - 44434170
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  44434139 ttctacacttatccttatttattaattttgtt 44434170  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 44429383 - 44429411
Alignment:
Q  284 ttctacacttatccttatttattaatttt 312  Q
    |||||||||||||||||||||||||||||    
T  44429383 ttctacacttatccttatttattaatttt 44429411  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 48641135 - 48641104
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  48641135 ttctacacttatccttatttattaattttgtt 48641104  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 25068126 - 25068157
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  25068126 ttctacacttatccttatttattaattttgtt 25068157  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 23622207 - 23622235
Alignment:
Q  287 tacacttatccttatttattaattttgtt 315  Q
    |||||||||||||||||||||||||||||    
T  23622207 tacacttatccttatttattaattttgtt 23622235  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 21585498 - 21585467
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  21585498 ttctacacttatccttatttattaattttgtt 21585467  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 5001313 - 5001282
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  5001313 ttctacacttatccttatttattaattttgtt 5001282  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 5012983 - 5012952
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  5012983 ttctacacttatccttatttattaattttgtt 5012952  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 44543623 - 44543592
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  44543623 ttctacacttatccttatttattaattttgtt 44543592  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 5001464 - 5001436
Alignment:
Q  284 ttctacacttatccttatttattaatttt 312  Q
    |||||||||||||||||||||||||||||    
T  5001464 ttctacacttatccttatttattaatttt 5001436  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 5001638 - 5001610
Alignment:
Q  287 tacacttatccttatttattaattttgtt 315  Q
    |||||||||||||||||||||||||||||    
T  5001638 tacacttatccttatttattaattttgtt 5001610  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 5013134 - 5013106
Alignment:
Q  284 ttctacacttatccttatttattaatttt 312  Q
    |||||||||||||||||||||||||||||    
T  5013134 ttctacacttatccttatttattaatttt 5013106  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 5428919 - 5428950
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  5428919 ttctacacttatccttatttattaattttgtt 5428950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 28950107 - 28950076
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  28950107 ttctacacttatccttatttattaattttgtt 28950076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 51113892 - 51113923
Alignment:
Q  284 ttctacacttatccttatttattaattttgtt 315  Q
    ||||||||||||||||||||||||||||||||    
T  51113892 ttctacacttatccttatttattaattttgtt 51113923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 24595224 - 24595252
Alignment:
Q  287 tacacttatccttatttattaattttgtt 315  Q
    |||||||||||||||||||||||||||||    
T  24595224 tacacttatccttatttattaattttgtt 24595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 27296326 - 27296354
Alignment:
Q  287 tacacttatccttatttattaattttgtt 315  Q
    |||||||||||||||||||||||||||||    
T  27296326 tacacttatccttatttattaattttgtt 27296354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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