View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_31 (Length: 320)

Name: NF0915_low_31
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_31
NF0915_low_31
[»] chr4 (38 HSPs)
chr4 (30-309)||(33262560-33262844)
chr4 (185-309)||(34778364-34778488)
chr4 (185-309)||(3952178-3952302)
chr4 (185-309)||(5763170-5763294)
chr4 (185-309)||(18207048-18207172)
chr4 (185-309)||(19901926-19902050)
chr4 (185-309)||(23610585-23610709)
chr4 (185-309)||(56558222-56558346)
chr4 (185-285)||(12241440-12241540)
chr4 (209-309)||(30567868-30567968)
chr4 (185-309)||(38079728-38079852)
chr4 (185-265)||(12153114-12153194)
chr4 (185-309)||(5416474-5416599)
chr4 (185-307)||(47922085-47922207)
chr4 (185-309)||(33247138-33247260)
chr4 (193-309)||(39862468-39862584)
chr4 (221-309)||(12312483-12312572)
chr4 (185-254)||(52018726-52018795)
chr4 (185-249)||(12312571-12312635)
chr4 (185-309)||(24073560-24073683)
chr4 (185-257)||(17080700-17080772)
chr4 (186-291)||(31862246-31862351)
chr4 (207-309)||(1871243-1871344)
chr4 (189-305)||(47922378-47922495)
chr4 (233-309)||(5524438-5524514)
chr4 (184-309)||(37002259-37002374)
chr4 (184-309)||(56269084-56269200)
chr4 (233-309)||(56453828-56453904)
chr4 (207-257)||(43447640-43447691)
chr4 (245-309)||(34927488-34927553)
chr4 (233-309)||(48084533-48084609)
chr4 (187-265)||(33841856-33841934)
chr4 (186-297)||(25442194-25442306)
chr4 (186-249)||(26428587-26428650)
chr4 (186-252)||(32366432-32366498)
chr4 (245-309)||(38865280-38865344)
chr4 (233-309)||(42010108-42010184)
chr4 (245-285)||(52030726-52030766)
[»] chr2 (23 HSPs)
chr2 (185-309)||(35316768-35316892)
chr2 (185-309)||(28564834-28564959)
chr2 (185-309)||(13238624-13238748)
chr2 (185-309)||(23259495-23259619)
chr2 (185-265)||(39465718-39465798)
chr2 (165-265)||(45625114-45625216)
chr2 (185-256)||(374499-374570)
chr2 (185-256)||(41983401-41983471)
chr2 (187-247)||(2061322-2061382)
chr2 (246-309)||(15709772-15709835)
chr2 (184-309)||(374945-375060)
chr2 (185-255)||(12949413-12949482)
chr2 (229-309)||(21454503-21454582)
chr2 (232-309)||(30709100-30709177)
chr2 (233-309)||(4446904-4446980)
chr2 (233-309)||(23459854-23459930)
chr2 (232-309)||(2063343-2063421)
chr2 (184-226)||(3354844-3354886)
chr2 (184-226)||(8988808-8988850)
chr2 (184-226)||(29188605-29188647)
chr2 (191-308)||(19908729-19908846)
chr2 (186-235)||(30824122-30824171)
chr2 (186-235)||(41073021-41073070)
[»] scaffold0012 (1 HSPs)
scaffold0012 (185-309)||(208006-208130)
[»] chr8 (25 HSPs)
chr8 (189-309)||(30426677-30426797)
chr8 (185-309)||(36991299-36991423)
chr8 (192-309)||(28069669-28069786)
chr8 (189-309)||(41511209-41511329)
chr8 (207-309)||(24101981-24102083)
chr8 (183-309)||(40695255-40695381)
chr8 (185-309)||(10672520-10672644)
chr8 (185-296)||(28318923-28319034)
chr8 (185-280)||(8412197-8412292)
chr8 (207-305)||(45113235-45113334)
chr8 (185-263)||(12177618-12177696)
chr8 (185-263)||(12422046-12422124)
chr8 (193-296)||(44859188-44859291)
chr8 (185-309)||(10652625-10652750)
chr8 (185-256)||(27490067-27490138)
chr8 (187-309)||(42761660-42761780)
chr8 (246-309)||(18689495-18689558)
chr8 (185-254)||(37966505-37966574)
chr8 (233-309)||(26749556-26749632)
chr8 (185-227)||(5033049-5033091)
chr8 (232-309)||(6399914-6399991)
chr8 (267-308)||(5033109-5033150)
chr8 (215-307)||(6014167-6014260)
chr8 (240-309)||(34612562-34612631)
chr8 (232-280)||(24557218-24557266)
[»] chr7 (27 HSPs)
chr7 (185-309)||(21151095-21151219)
chr7 (185-309)||(45260435-45260559)
chr7 (185-309)||(16366461-16366585)
chr7 (185-309)||(7362511-7362635)
chr7 (185-309)||(9559062-9559186)
chr7 (185-309)||(25084736-25084860)
chr7 (185-309)||(4888410-4888534)
chr7 (185-309)||(12139271-12139394)
chr7 (185-309)||(44647908-44648031)
chr7 (185-305)||(18198199-18198319)
chr7 (186-309)||(47500290-47500414)
chr7 (185-309)||(47226084-47226205)
chr7 (185-309)||(29630991-29631115)
chr7 (186-309)||(33450450-33450574)
chr7 (217-309)||(39855821-39855913)
chr7 (186-309)||(32915903-32916023)
chr7 (245-309)||(46802339-46802403)
chr7 (233-309)||(47799908-47799984)
chr7 (185-309)||(34985953-34986077)
chr7 (207-264)||(40019646-40019703)
chr7 (245-309)||(989132-989196)
chr7 (233-309)||(30588526-30588602)
chr7 (191-307)||(40023266-40023381)
chr7 (184-226)||(19889115-19889157)
chr7 (201-254)||(35265232-35265286)
chr7 (233-309)||(19889042-19889118)
chr7 (186-226)||(30588489-30588529)
[»] chr6 (21 HSPs)
chr6 (185-309)||(4804391-4804515)
chr6 (185-309)||(7162027-7162151)
chr6 (185-297)||(29698106-29698218)
chr6 (165-305)||(21159381-21159523)
chr6 (185-297)||(1249166-1249278)
chr6 (185-309)||(17944105-17944229)
chr6 (187-309)||(12412582-12412704)
chr6 (185-309)||(27826481-27826605)
chr6 (185-257)||(32737817-32737889)
chr6 (186-309)||(227571-227695)
chr6 (217-309)||(13089757-13089849)
chr6 (185-253)||(30460763-30460831)
chr6 (229-309)||(2800619-2800699)
chr6 (233-309)||(24484870-24484946)
chr6 (209-263)||(1516243-1516297)
chr6 (209-263)||(1518332-1518386)
chr6 (237-309)||(13888530-13888603)
chr6 (233-309)||(7215860-7215936)
chr6 (210-309)||(17828576-17828675)
chr6 (207-237)||(17398774-17398804)
chr6 (233-309)||(2142301-2142377)
[»] chr5 (25 HSPs)
chr5 (185-309)||(4895743-4895867)
chr5 (185-309)||(35660617-35660741)
chr5 (185-309)||(32129625-32129749)
chr5 (185-309)||(11775735-11775860)
chr5 (189-309)||(37266678-37266798)
chr5 (186-307)||(40753172-40753293)
chr5 (185-309)||(14349747-14349870)
chr5 (207-309)||(18625429-18625531)
chr5 (185-309)||(13032062-13032185)
chr5 (185-309)||(39902358-39902482)
chr5 (185-297)||(4592744-4592855)
chr5 (187-309)||(3057162-3057284)
chr5 (189-309)||(34827140-34827259)
chr5 (191-265)||(1475690-1475764)
chr5 (185-307)||(8440981-8441103)
chr5 (193-309)||(3057367-3057483)
chr5 (186-309)||(43309062-43309175)
chr5 (207-309)||(32793339-32793441)
chr5 (213-285)||(28142807-28142881)
chr5 (233-309)||(36290593-36290669)
chr5 (249-309)||(27428889-27428949)
chr5 (246-309)||(29340999-29341062)
chr5 (233-309)||(17247397-17247473)
chr5 (233-309)||(31546477-31546553)
chr5 (245-309)||(43222129-43222193)
[»] chr3 (24 HSPs)
chr3 (185-309)||(27033594-27033718)
chr3 (185-309)||(34373774-34373898)
chr3 (185-309)||(34373593-34373717)
chr3 (185-309)||(43719955-43720079)
chr3 (189-305)||(19830443-19830560)
chr3 (165-307)||(40851690-40851839)
chr3 (185-309)||(2229926-2230050)
chr3 (189-309)||(46167340-46167460)
chr3 (185-297)||(550836-550948)
chr3 (186-309)||(48084763-48084887)
chr3 (207-309)||(12402930-12403033)
chr3 (184-309)||(42613032-42613147)
chr3 (192-297)||(566794-566898)
chr3 (187-264)||(36354316-36354393)
chr3 (245-297)||(35963361-35963413)
chr3 (184-309)||(31523676-31523791)
chr3 (233-309)||(1995435-1995511)
chr3 (192-263)||(2310261-2310330)
chr3 (185-256)||(52859441-52859513)
chr3 (186-309)||(25285845-25285966)
chr3 (232-309)||(40810363-40810441)
chr3 (233-309)||(49679278-49679354)
chr3 (186-237)||(32577476-32577526)
chr3 (184-226)||(3009191-3009233)
[»] chr1 (32 HSPs)
chr1 (185-309)||(12151710-12151834)
chr1 (185-303)||(12380924-12381042)
chr1 (185-303)||(12384991-12385109)
chr1 (185-309)||(50484329-50484453)
chr1 (185-309)||(50294071-50294195)
chr1 (185-309)||(23861960-23862088)
chr1 (189-264)||(7841763-7841838)
chr1 (185-265)||(45977965-45978045)
chr1 (189-309)||(24977187-24977307)
chr1 (185-309)||(40328219-40328344)
chr1 (223-309)||(18976312-18976398)
chr1 (192-309)||(48327162-48327279)
chr1 (187-295)||(5047403-5047510)
chr1 (185-267)||(2845208-2845291)
chr1 (247-309)||(32361315-32361377)
chr1 (207-260)||(45970811-45970864)
chr1 (233-309)||(52280047-52280123)
chr1 (188-285)||(46608409-46608504)
chr1 (185-250)||(40988658-40988723)
chr1 (187-307)||(32887790-32887910)
chr1 (233-309)||(39426201-39426277)
chr1 (185-291)||(7783206-7783312)
chr1 (232-294)||(32618791-32618853)
chr1 (229-309)||(5854854-5854934)
chr1 (193-297)||(7844939-7845043)
chr1 (245-308)||(24413291-24413354)
chr1 (207-282)||(26372218-26372292)
chr1 (186-237)||(42720837-42720888)
chr1 (187-257)||(49384720-49384788)
chr1 (229-265)||(1228582-1228618)
chr1 (233-309)||(26860058-26860134)
chr1 (233-309)||(30077652-30077728)
[»] scaffold0035 (1 HSPs)
scaffold0035 (185-309)||(16405-16529)
[»] scaffold0250 (1 HSPs)
scaffold0250 (185-309)||(7090-7214)
[»] scaffold0126 (1 HSPs)
scaffold0126 (187-309)||(22450-22572)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-265)||(73892-73972)
[»] scaffold0456 (1 HSPs)
scaffold0456 (187-265)||(13641-13719)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-309)||(6443-6585)
[»] scaffold0008 (1 HSPs)
scaffold0008 (185-309)||(9209-9330)
[»] scaffold0062 (1 HSPs)
scaffold0062 (246-309)||(58684-58747)
[»] scaffold0171 (1 HSPs)
scaffold0171 (233-309)||(17314-17390)
[»] scaffold0468 (1 HSPs)
scaffold0468 (191-264)||(5559-5632)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 33262844 - 33262560
Alignment:
Q  30 gttaagcagacaaatcagctaattaattcttcttattcgtctcatttatattcatgactcatttccatgtgggatggtatcatactttgagttattttct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33262844 gttaagcagacaaatcagctaattaattcttcttattcgtctcatttatattcatgactcatttccatgtgggatggtatcatactttgagttattttca 33262745  T
Q  130 gttggtagagaggaatcaatcccacgnnnnnnnnngggttaggatcctctcca------tatttctccatttcttcaatttatagagataaagacacata 223  Q
     |||||||||||||||| ||||||||          | ||||||| |||||||      ||||| || |||||||||||||  |||||||||||||||||    
T  33262744 attggtagagaggaatccatcccacgtttttttttagtttaggat-ctctccatttatgtatttttctatttcttcaatttggagagataaagacacata 33262646  T
Q  224 aaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||| || |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  33262645 aaattttaaaaaaagtaaaatataattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctct 33262560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 34778364 - 34778488
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  34778364 tttctccatttcttcaatgtggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcca 34778463  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  34778464 ccatctattttttgtgtctatctct 34778488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 3952302 - 3952178
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||| |||    
T  3952302 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgagacccacttagtggtaggaccca 3952203  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  3952202 ccatctattttttttgtctatctct 3952178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 5763294 - 5763170
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  5763294 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 5763195  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| | |||||||||    
T  5763194 ccatctattttttgtttctatctct 5763170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 18207172 - 18207048
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||    
T  18207172 tttctcaatttcttcaatttggaaagataaagacacataaaatcttgaaaaaggtaaaatataattaatgatgatgggacccacttagtggtaggaccca 18207073  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  18207072 ccatctattttttttgtctatctct 18207048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 19902050 - 19901926
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  19902050 tttctctatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 19901951  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  19901950 ccatctattttttgtgtctatctct 19901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 23610585 - 23610709
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| || |||    
T  23610585 tttctccatttcttcaatttggagagataaagatacataaaatcttgaaaaaagtaaaatatatttaatgatggtgggacccacttagtggtatgaccca 23610684  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  23610685 ccatctattttttgtgtctatctct 23610709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 56558222 - 56558346
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |||    
T  56558222 tttctctatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtgataggaccca 56558321  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  56558322 ccatctattttttgtgtctatctct 56558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 12241540 - 12241440
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  12241540 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 12241441  T
Q  285 c 285  Q
    |    
T  12241440 c 12241440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 30567868 - 30567968
Alignment:
Q  209 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctc 308  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||||||||||    
T  30567868 agataaagacacataaaattttgaaaaaagtaaaatataattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctc 30567967  T
Q  309 t 309  Q
    |    
T  30567968 t 30567968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 38079852 - 38079728
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| | |||||| |||    
T  38079852 tttctccattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaatccacttagtagtaggaccca 38079753  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  38079752 ccatctatttcttgtgtctatctct 38079728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 12153114 - 12153194
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12153114 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 12153194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 5416599 - 5416474
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa--gtaaaatataattaatgatgatgggacctacttattggtaggatc 282  Q
    ||||||||||||||||||||  | |||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||| ||||| |||||||| |    
T  5416599 tttctccatttcttcaatttggacagataaagacacataaaatctttaaaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacc 5416500  T
Q  283 caccatctattttttatgtctatctct 309  Q
    ||| ||||| ||||| |||||||||||    
T  5416499 cacaatcta-tttttgtgtctatctct 5416474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 307
Target Start/End: Complemental strand, 47922207 - 47922085
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||||||| ||||||||| ||||||||| ||| ||| ||||| ||||| || |||    
T  47922207 tttctccatttcttcaatttagagagataaagacacgtaaaatattgaaaaaaataaaatatatttaatgatggtggaacccacttagtggtaagaccca 47922108  T
Q  285 ccatctattttttatgtctatct 307  Q
    | ||||||||||| ||| |||||    
T  47922107 ctatctattttttgtgtttatct 47922085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 33247260 - 33247138
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||| ||| | ||| |||||| | |||    
T  33247260 tttctccatttcttcaatttggagagataaagacacataaaatc--gaaaaaaataaaatataattaatgatggtggaacccatttagtggtagaaccca 33247163  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  33247162 ccatctatttcttgtgtctatctct 33247138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 39862468 - 39862584
Alignment:
Q  193 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 292  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||  | ||| || |||||  ||||||||||    
T  39862468 tttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaactcatttagtgataggacacaccatctat 39862567  T
Q  293 tttttatgtctatctct 309  Q
    ||||| |||||||||||    
T  39862568 tttttgtgtctatctct 39862584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 12312572 - 12312483
Alignment:
Q  221 ataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatctct 309  Q
    |||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||    
T  12312572 ataaaatcttaaagaaagtaaaatataattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctct 12312483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 52018726 - 52018795
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatg 254  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52018726 tttctccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatg 52018795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 12312635 - 12312571
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataat 249  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12312635 tttctccatttcttcaatttagagagataaagacacataaaattttgaaaaaagtaaaatataat 12312571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 24073560 - 24073683
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  |||||| ||| ||||||||||||||||||||  || |||||||||||||||  |||||| ||||| |||||||| |||    
T  24073560 tttctcaatttcttccatttggagagatgaaggcacataaaatcttgaaaaaaa-aatatataattaatgatggcgggacccacttagtggtaggaccca 24073658  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  24073659 ccatctatttgttgtgtctatctct 24073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 17080772 - 17080700
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 257  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  17080772 tttctccatttcttcaatttggagagataaagacagataaaatcttggaaaaagtaaaatataatgaatgatg 17080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 31862351 - 31862246
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    ||||| |||||| | ||||  ||||||| ||||||| ||||| ||  ||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||    
T  31862351 ttctctatttctaccatttggagagatatagacacacaaaattttagaaaaagtaaaaaataattaatgatggtgggacccacttagtggtaggatccac 31862252  T
Q  286 catcta 291  Q
    ||||||    
T  31862251 catcta 31862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 1871243 - 1871344
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatc 306  Q
    ||||||||||||||| | ||  ||||||||| || || ||||||||||||||||||||| ||||| | ||||||||||| |||||| |||| ||||||||    
T  1871243 agagataaagacacaaagaaatttgaaaaaa-tataaaataattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatc 1871341  T
Q  307 tct 309  Q
    |||    
T  1871342 tct 1871344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 47922495 - 47922378
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 288  Q
    ||||||||| | |||| ||| |||| | ||||| ||| | ||||||||||||||| |||||||  |||||||||||| ||||| |||||||| |||||||    
T  47922495 tccatttctaccatttgtagtgatataaacacacaaagttttgaaaaaagtaaaaaataattatagatgatgggacccacttagtggtaggacccaccat 47922396  T
Q  289 ctatt-ttttatgtctat 305  Q
    ||||| |||| |||||||    
T  47922395 ctattcttttgtgtctat 47922378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 5524438 - 5524514
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||||||  ||||||||||||||||||||    
T  5524438 aaaaagtaaaaaataattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctct 5524514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 37002374 - 37002259
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| |  ||||||||    
T  37002374 atttctccatttgttccatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtaataggatcc 37002285  T
Q  284 accatctattttttatgtctatctct 309  Q
    ||||  |||||||| |||||||||||    
T  37002284 accacttattttttgtgtctatctct 37002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 56269200 - 56269084
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||  |  ||||||       ||||||||||||| ||||||| ||||| |||||||| ||    
T  56269200 atttctccatttgttccatttagagagataaagacacataaaaagt--aaaaaa-------ataattaatgatggtgggacccacttagtggtaggaccc 56269110  T
Q  284 accatctattttttatgtctatctct 309  Q
    ||||  |||||||| |||||||||||    
T  56269109 accacttattttttgtgtctatctct 56269084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 56453904 - 56453828
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||| ||||||| ||||||| ||||| || ||||| |||||| ||||||||| |||||||||||    
T  56453904 aaaaagtaaaaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctct 56453828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 43447691 - 43447640
Alignment:
Q  207 agagataaagacacataaaa-tcttgaaaaaagtaaaatataattaatgatg 257  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  43447691 agagataaagacacataaaaattttgaaaaaagtaaaatataattaatgatg 43447640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 34927488 - 34927553
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatctct 309  Q
    |||||||||||||||| ||| |||||| |||||||| |||||||||||| |||| |||||||||||    
T  34927488 ataattaatgatgatgagacatacttaatggtaggacccaccatctattcttttgtgtctatctct 34927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 48084609 - 48084533
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||| | ||||||  ||| ||||||||||||||||    
T  48084609 aaaaagtaaaaaataattaatgatggtgggacccacttagtgctagaacccaccacttatgttttatgtctatctct 48084533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 33841934 - 33841856
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    |||||||||| || ||||  | ||||||||||||| ||||||||||||| |||| |  ||||||||||||| |||||||    
T  33841934 tctccatttcctccatttggaaagataaagacacaaaaaatcttgaaaagagtatacaataattaatgatggtgggacc 33841856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 25442306 - 25442194
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||||||||||| ||||  ||||||||||||||| | |||  | ||||||| ||||| ||||||||||  | || || | ||||| |||||||| |||    
T  25442306 ttctccatttcttccatttggagagataaagacacacacaattataaaaaaagttaaaaaataattaatgtcggtgagatccacttagtggtaggaccca 25442207  T
Q  285 ccatctatttttt 297  Q
    | |||||||||||    
T  25442206 caatctatttttt 25442194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 26428587 - 26428650
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataat 249  Q
    |||||||||||| ||||||  ||||||| ||||||| ||| | ||||||||||||||| |||||    
T  26428587 ttctccatttctacaatttggagagatatagacacacaaatttttgaaaaaagtaaaaaataat 26428650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 32366498 - 32366432
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaa 252  Q
    |||||||||||||| ||||| ||||| |||||| | || ||| || |||||||||||| ||||||||    
T  32366498 ttctccatttcttctatttagagagacaaagacgcgtagaattttaaaaaaagtaaaaaataattaa 32366432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 38865280 - 38865344
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||||| ||| ||||| ||| |||||||| | ||||  |||||||| |||||||||||    
T  38865280 ataattaatgatgctggaacctatttaatggtaggacctaccacatattttttgtgtctatctct 38865344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 42010108 - 42010184
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| | ||| || ||||| || |||  |||||||| | |||||||||    
T  42010108 aaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtatctatctct 42010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 52030766 - 52030726
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccac 285  Q
    ||||||||||||| ||||||| ||||||| |||||||||||    
T  52030766 ataattaatgatggtgggacccacttatttgtaggatccac 52030726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 35316768 - 35316892
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  35316768 tttctccatttcttcaatttggagagataaagacatataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcca 35316867  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  35316868 ccatctattttttgtgtctatctct 35316892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 28564834 - 28564959
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttg-aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||| |||||||| ||    
T  28564834 tttctccatttcttcaatttggagagataaagacacataaaatcttttaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccc 28564933  T
Q  284 accatctattttttatgtctatctct 309  Q
    |||||||||||||| |||||||||||    
T  28564934 accatctattttttgtgtctatctct 28564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 13238624 - 13238748
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||  |||||||| |||    
T  13238624 tttctcaatttcttcaatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttggtggtaggaccca 13238723  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  13238724 ccatctattttttgtgtctatctct 13238748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 23259619 - 23259495
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||| ||||||||||||||  || |||||||||| |||||||||| |||||||||||||||||||||||||| ||||| | ||||| | |||||| |||    
T  23259619 tttcttcatttcttcaattttgagggataaagacatataaaatcttaaaaaaagtaaaatataattaatgatggtgggatccacttagtagtaggaccca 23259520  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||| ||||||||| |||||||||||    
T  23259519 ccagctattttttgtgtctatctct 23259495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 39465718 - 39465798
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39465718 tttctccattttttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 39465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 45625216 - 45625114
Alignment:
Q  165 gggttaggatcctctccatat--ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggg 262  Q
    |||||||||||||||| || |  |||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||| ||||||||||| ||||    
T  45625216 gggttaggatcctctcaatgtgtttctccatttcttcaatttagagagataaagacacgtaaaatcttgaaaaatataaaataaaattaatgatggtggg 45625117  T
Q  263 acc 265  Q
    |||    
T  45625116 acc 45625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 374570 - 374499
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 256  Q
    ||||||| ||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  374570 tttctccctttctttcatttagagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgat 374499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 41983471 - 41983401
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 256  Q
    |||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41983471 tttctccatttctttaatttggagagataaagacacataaa-tcttgaaaaaagtaaaatataattaatgat 41983401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 2061322 - 2061382
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatata 247  Q
    |||| |||||||| ||||  |||||||||||| ||||||||||||||||||||||||||||    
T  2061322 tctcaatttcttccatttggagagataaagacgcataaaatcttgaaaaaagtaaaatata 2061382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 15709772 - 15709835
Alignment:
Q  246 taattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||| |||||||    
T  15709772 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctct 15709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 374945 - 375060
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| |  ||||| ||    
T  374945 atttctccatttgttccatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtaataggaccc 375034  T
Q  284 accatctattttttatgtctatctct 309  Q
    ||||  |||||||| |||||||||||    
T  375035 accacttattttttgtgtctatctct 375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 12949413 - 12949482
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatga 255  Q
    ||||||| ||||| | ||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  12949413 tttctccgtttctcctatttggagagataaagatacataaaatcttgaaaaaagtaaaa-ataattaatga 12949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 21454582 - 21454503
Alignment:
Q  229 ttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||||| ||||| || |||| ||||| ||||| |||||||||||    
T  21454582 ttgaaaaaagtaaaaaataattaatgatggtggaacccacttaatggtatgacccacaatcta-tttttgtgtctatctct 21454503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 30709100 - 30709177
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||| | ||||||||||| ||||| | ||||| |||||||| |||  ||||||||| | |||||||||||    
T  30709100 aaaaaagtaaaaaacaattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctct 30709177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 4446980 - 4446904
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||  ||  ||| | ||| ||||||||||||| ||||||||| | |||||||||||    
T  4446980 aaaaagtaaaaaataattaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctct 4446904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 23459930 - 23459854
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| | ||| || ||||| || |||  |||||||| |||||||||||    
T  23459930 aaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctct 23459854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 2063343 - 2063421
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca-ccatctattttttatgtctatctct 309  Q
    ||||||||| ||||| |||||||||| ||| ||| ||||  |||||||| | | ||||||||||||| |||||||||||    
T  2063343 aaaaaagtataatattattaatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctct 2063421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3354886 - 3354844
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  3354886 atttctccatttgttctatttagagagataaagacacataaaa 3354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 8988808 - 8988850
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  8988808 atttctccatttgttccatttagagagataaagacacataaaa 8988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 29188605 - 29188647
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  29188605 atttctccatttgttccatttagagagataaagacacataaaa 29188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 19908729 - 19908846
Alignment:
Q  191 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatct 290  Q
    |||||| || ||||| ||||||| ||| ||| ||||  || |||| | ||||| ||||||||||||| ||||||| |||||   ||||||  ||| ||||    
T  19908729 catttcatccatttagagagatatagatacacaaaaatttcaaaacactaaaaaataattaatgatggtgggacccacttaaaagtaggactcactatct 19908828  T
Q  291 attttttatgtctatctc 308  Q
    ||||| | ||||||||||    
T  19908829 attttatgtgtctatctc 19908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 30824122 - 30824171
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa 235  Q
    |||||||||||||| ||||| ||||||| ||||||| |||||||| ||||    
T  30824122 ttctccatttcttccatttagagagatatagacacaaaaaatcttaaaaa 30824171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 41073070 - 41073021
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa 235  Q
    |||||||||||||  ||||| ||||||||||||||| |||||||| ||||    
T  41073070 ttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaa 41073021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 208006 - 208130
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||    
T  208006 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggacccacttagtggtaggaccca 208105  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| ||| |||||||    
T  208106 ccatctattttttgtgtttatctct 208130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 30426797 - 30426677
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 288  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||    
T  30426797 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccat 30426698  T
Q  289 ctattttttatgtctatctct 309  Q
    ||||||||| |||||||||||    
T  30426697 ctattttttgtgtctatctct 30426677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 36991299 - 36991423
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| |||    
T  36991299 tttctccatttcttcaatttggagagataaagacacgtaaaatcttgaaaaaagtcaaatataattaatgatggtgggacccacttagtggtaggaccca 36991398  T
Q  285 ccatctattttttatgtctatctct 309  Q
     ||||||||| ||||||||||||||    
T  36991399 tcatctatttcttatgtctatctct 36991423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 28069669 - 28069786
Alignment:
Q  192 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatcta 291  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||    
T  28069669 atttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 28069768  T
Q  292 ttttttatgtctatctct 309  Q
    |||||| ||||| |||||    
T  28069769 ttttttgtgtctttctct 28069786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 41511209 - 41511329
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 288  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| || ||||| |||| ||    
T  41511209 tccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtgataggacccactat 41511308  T
Q  289 ctattttttatgtctatctct 309  Q
    ||||||||||| |||||||||    
T  41511309 ctattttttatatctatctct 41511329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 24101981 - 24102083
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatc 306  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||||||||||||||||    
T  24101981 agagataaagacacgtaaaatcttgaaaaaaatgaaatataattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatc 24102080  T
Q  307 tct 309  Q
    |||    
T  24102081 tct 24102083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 40695381 - 40695255
Alignment:
Q  183 tatttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatc 282  Q
    ||||| ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||  ||||| |||||||| |    
T  40695381 tatttatccatttcttcaatttggagggataaagaaacataaaatcttgaaaaaagtaaaatataactaatgatggtggaactcacttagtggtaggacc 40695282  T
Q  283 caccatctattttttatgtctatctct 309  Q
     |||||||||||||| |||||||||||    
T  40695281 taccatctattttttgtgtctatctct 40695255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 10672644 - 10672520
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||| ||||| ||||||||  ||||||||| | ||||||||| || ||||  |||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  10672644 tttcttcatttattcaatttggagagataaaaatacataaaattttaaaaagggtaaaatataattaatgatggtgggactcacttagtggtaggatcca 10672545  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  10672544 ccatctattttttgtgtctatctct 10672520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 28319034 - 28318923
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| ||||| |||||||| |||    
T  28319034 tttctccatttcttcaatttggagagacaaagacacataaaattttaaaaaaagtaaaatataattaatgatggttggacccacttagtggtaggaccca 28318935  T
Q  285 ccatctattttt 296  Q
    | |||| |||||    
T  28318934 ctatcttttttt 28318923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 8412197 - 8412292
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtagga 280  Q
    ||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||| || || ||||||| ||||||||    
T  8412197 tttcttcattttttccatttagagagataaatacacataaaatattgaaaaaagtaaaatataattaacgatggtgagatctacttagtggtagga 8412292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 45113235 - 45113334
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctat 305  Q
    ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||  ||||| |||| ||| |||||||||||| |||| |||||||    
T  45113235 agagatatagacacataaaattttgaaaaaaataaaaaataattaatgatgatgggacacacttagtggttggacccaccatctattcttttgtgtctat 45113334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 12177696 - 12177618
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 263  Q
    ||||||||||||||||||||| |||||||| ||||  |||||||||||||||| |||||||||| |||||||| |||||    
T  12177696 tttctccatttcttcaatttaaagagataaggacaattaaaatcttgaaaaaaataaaatataactaatgatggtggga 12177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 12422124 - 12422046
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 263  Q
    ||||||||||||||||||||| |||||||| ||||  |||||||||||||||| |||||||||| |||||||| |||||    
T  12422124 tttctccatttcttcaatttaaagagataaggacaattaaaatcttgaaaaaaataaaatataactaatgatggtggga 12422046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 44859291 - 44859188
Alignment:
Q  193 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 292  Q
    |||||| |||||  |||||||||||||| | |||| ||  ||||| ||||||||||||||||||| ||||||| ||||| |||||| | |||||||||||    
T  44859291 tttctttaatttggagagataaagacacgtgaaattttttaaaaaataaaatataattaatgatggtgggacccacttagtggtagaacccaccatctat 44859192  T
Q  293 tttt 296  Q
    ||||    
T  44859191 tttt 44859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 10652750 - 10652625
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa-gtaaaa-tataattaatgatgatgggacctacttattggtaggatc 282  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| ||||||| | ||| | ||| || |    
T  10652750 tttcttcatttcttcaatttggagagataaa-acacataaaattttgaaaaaaagtaaaaatataattaatgatggtgggacccaattagtagtatgacc 10652652  T
Q  283 caccatctattttttatgtctatctct 309  Q
    ||||||| ||||||| | |||||||||    
T  10652651 caccatcaattttttgtatctatctct 10652625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 27490138 - 27490067
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 256  Q
    |||||| |||||||| ||||  ||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  27490138 tttctcaatttcttccatttgaagagacaaaaatacataaaatcttgaaaaaagtaaaatataattaatgat 27490067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 42761660 - 42761780
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    |||||||||||||||||   ||||||| |||| || ||||  ||| ||||| ||||| ||||||||||||||||| ||| ||| | |||||||||||||     
T  42761660 tctccatttcttcaattgg-agagatatagactcaaaaaaa-ttggaaaaattaaaaaataattaatgatgatggaacccactgagtggtaggatccact 42761757  T
Q  287 atctattttttatgtctatctct 309  Q
    ||||||||| | |||||||||||    
T  42761758 atctattttatgtgtctatctct 42761780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 18689495 - 18689558
Alignment:
Q  246 taattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||| |||||||    
T  18689495 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctct 18689558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 37966574 - 37966505
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatg 254  Q
    ||||||||||||||  ||||  ||||||||||| ||||||||  || |||||||||||||||||||||||    
T  37966574 tttctccatttcttttatttggagagataaagatacataaaaatttaaaaaaagtaaaatataattaatg 37966505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 26749632 - 26749556
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||| ||  |||||||| |||||||||||    
T  26749632 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctct 26749556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 5033049 - 5033091
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaat 227  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  5033049 tttctccatttcttcaatttggagagataaagacacataaaat 5033091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 6399914 - 6399991
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||| |||||||||||| |||||| | ||||  |  || || |||||||||||||||| |||||||||||    
T  6399914 aaaaaagtaaaaaataattaatgataatgggatccacttggtaataagacccaccatctattttttgtgtctatctct 6399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 5033109 - 5033150
Alignment:
Q  267 acttattggtaggatccaccatctattttttatgtctatctc 308  Q
    ||||| |||||||| |||||||||||||||| ||||||||||    
T  5033109 acttagtggtaggacccaccatctattttttgtgtctatctc 5033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 6014167 - 6014260
Alignment:
Q  215 agacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatct 307  Q
    ||||||| ||| | || |||||||||||| |||||||||||| || ||| | ||||| |||||||| | | |||||||| |||| |||||||||    
T  6014167 agacacacaaagttttcaaaaaagtaaaacataattaatgataataggatccacttaatggtaggacctatcatctattcttttgtgtctatct 6014260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 34612562 - 34612631
Alignment:
Q  240 aaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||| ||||||||||||| || |||| ||||| || ||||| ||||||  |||||||| |||||||||||    
T  34612562 aaaaaataattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctct 34612631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 24557266 - 24557218
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtagga 280  Q
    ||||||||||||  |||||||||||||||||||  ||||| ||||||||    
T  24557266 aaaaaagtaaaaagtaattaatgatgatgggactcacttaatggtagga 24557218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 21151095 - 21151219
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||     
T  21151095 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcct 21151194  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  21151195 ccatctatttcttgtgtctatctct 21151219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 45260559 - 45260435
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  45260559 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggatccacttagtggtaggatcca 45260460  T
Q  285 ccatctattttttatgtctatctct 309  Q
    | ||||||||||| |||||||||||    
T  45260459 caatctattttttgtgtctatctct 45260435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 16366461 - 16366585
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  16366461 tttctccatttcttcaatttggagagataaaaacacgtaaaatcttgaaaaaagtaaaatataattaatgatggtgggacacacttagtggtaggatcca 16366560  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| ||||||||||||||    
T  16366561 ccatctatttcttatgtctatctct 16366585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 7362511 - 7362635
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| || |||    
T  7362511 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaacccatttagtggtacgaccca 7362610  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  7362611 ccatctattttttgtgtctatctct 7362635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 9559186 - 9559062
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  9559186 tttctcgatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 9559087  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| | |||||||||    
T  9559086 ccatctattttttgtatctatctct 9559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 25084860 - 25084736
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||| || |||||  ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  25084860 tttctccatttttttaatttgaagagataaagacacataaaattttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 25084761  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  25084760 ccatctattttttgtgtctatctct 25084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 4888410 - 4888534
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  |||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||| |||||||| |||    
T  4888410 tttctcaatttcttccatttggagagataaagacacataaaatcttaaaaaacataaaatataattaatgatggtgggacctacttagtggtaggaccca 4888509  T
Q  285 ccatctattttttatgtctatctct 309  Q
    | ||||||||||| |||||||||||    
T  4888510 ctatctattttttgtgtctatctct 4888534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 12139271 - 12139394
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga-cctacttattggtaggatcc 283  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||    
T  12139271 tttctccatttcttcaatttggagagataaa--cacataaaatcttaaaaaaagtaaaatataattaatgatggtgggaccccacttaatggtaggaccc 12139368  T
Q  284 accatctattttttatgtctatctct 309  Q
    |||||||||||||| |||||||||||    
T  12139369 accatctattttttgtgtctatctct 12139394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 44647908 - 44648031
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgg--gacctacttattggtaggatc 282  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||  |||| ||||| |||| |||||    
T  44647908 tttctccatttcttcaattt---gagataaagacacataaaatcttgaaaaatgtaaaatataattaatgatggagggagacccacttagtggtcggatc 44648004  T
Q  283 caccatctattttttatgtctatctct 309  Q
    ||||||||||||||| |||||||||||    
T  44648005 caccatctattttttgtgtctatctct 44648031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 18198199 - 18198319
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||| ||||||  ||||| ||| || | |||    
T  18198199 tttctccatttcttcaatttgtagagataaaatcacataaaatcttgaaaaaaataaaatataattaatgatggtgggactcacttagtggcagaaccca 18198298  T
Q  285 ccatctattttttatgtctat 305  Q
    ||||||||||||| |||||||    
T  18198299 ccatctattttttgtgtctat 18198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 47500414 - 47500290
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||| | ||||| ||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  47500414 ttctccatttctaccatttagagagatatagacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 47500315  T
Q  286 catctatt-ttttatgtctatctct 309  Q
    |||||||| |||| |||||||||||    
T  47500314 catctattcttttgtgtctatctct 47500290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 47226205 - 47226084
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| ||| |||    
T  47226205 tttctctatttcttcaatttggagagataaa-acacataaaatcttggaaaaagtaaaatataattaatgatggtgggacccatttagtggtgggaccca 47226107  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||  |||||||| ||| |||||||    
T  47226106 cca--tattttttgtgtttatctct 47226084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 29630991 - 29631115
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||  ||||  ||| ||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||||| || |||| ||| |||    
T  29630991 tttctccatttctttcatttggagatataaagacacataaaattttgaaaaaagtaaagaataattaatgatagtgggacctacatagtggttggaccca 29631090  T
Q  285 ccatctattttttatgtctatctct 309  Q
    | |||||| |||| |||||||||||    
T  29631091 ctatctatgttttgtgtctatctct 29631115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 33450450 - 33450574
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||| | ||||  ||||||| | ||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  33450450 ttctccatttctaccatttggagagatataaacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 33450549  T
Q  286 catctatt-ttttatgtctatctct 309  Q
    |||||||| |||| |||||||||||    
T  33450550 catctattcttttgtgtctatctct 33450574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 39855913 - 39855821
Alignment:
Q  217 acacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | ||||||| |||| | |||||||||||    
T  39855913 acacttaaaatcttgaaaaaagtaaaatttaattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctct 39855821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 32915903 - 32916023
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||||| ||||  ||||||||||||||| ||||  || ||||||   |||||||||| |||||| ||||||  ||||| |||||||| ||||    
T  32915903 ttctccatttcttccatttggagagataaagacacaaaaaagttttaaaaaa---aaatataattcatgatggtgggactcacttaatggtaggacccac 32915999  T
Q  286 catctattttttatgtctatctct 309  Q
     || |||||||| |||||||||||    
T  32916000 tatttattttttgtgtctatctct 32916023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 46802403 - 46802339
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||| | || ||||||| ||||| |||||||| ||||| ||||||||||||||||||||||    
T  46802403 ataattaacggtggtgggacccacttagtggtaggacccaccgtctattttttatgtctatctct 46802339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 47799984 - 47799908
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||| ||  |||||||| |||||||||||    
T  47799984 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctct 47799908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 34986077 - 34985953
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    ||||||||||||| | ||||  ||||||| |||||  |||||| |||||||||  ||||| ||||||||||||||||||||  | ||| ||||  || ||    
T  34986077 tttctccatttctaccatttggagagatatagaca--taaaattttgaaaaaaaataaaaaataattaatgatgatgggactcatttagtggtttgaccc 34985980  T
Q  284 accatctatt-ttttatgtctatctct 309  Q
    |||||||||| |||| |||||||||||    
T  34985979 accatctattcttttgtgtctatctct 34985953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 40019646 - 40019703
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 264  Q
    ||||||||| ||||| |||||||||||||||||| ||  |||||||||||| ||||||    
T  40019646 agagataaaaacacaaaaaatcttgaaaaaagtataaagtaattaatgatggtgggac 40019703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 989132 - 989196
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||| ||| | ||||||||||| |||||||| |||| || |||||||| |||||||||||    
T  989132 ataattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctct 989196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 30588526 - 30588602
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||  ||  |||||||| |||||||||||    
T  30588526 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccgtcacttattttttgtgtctatctct 30588602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 40023381 - 40023266
Alignment:
Q  191 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatct 290  Q
    ||||||||| ||||| ||||||| | || || ||||   ||||||||| |||| |||||||||| || ||||||| ||||| ||||| ||||||  | ||    
T  40023381 catttcttccatttagagagatataaactcaaaaaaaaatgaaaaaagaaaaa-ataattaatggtggtgggacccacttaatggtaagatccattaact 40023283  T
Q  291 attttttatgtctatct 307  Q
    ||||| |||||||||||    
T  40023282 attttatatgtctatct 40023266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 19889157 - 19889115
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  19889157 atttctccatttattccatttagagagataaagacacataaaa 19889115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 35265286 - 35265232
Alignment:
Q  201 atttatagagataaagacacataaaatcttgaa-aaaagtaaaatataattaatg 254  Q
    |||||| |||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  35265286 atttattgagataaagacacaaaaaatcttgaaaaaaagtataaaataattaatg 35265232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 19889118 - 19889042
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||| ||| ||||| || ||||| |||| |  |||||||| | |||||||||    
T  19889118 aaaaagtaaaaaataattaatgatggtggaacccacttagtgataggacccacaacttattttttgtatctatctct 19889042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 30588489 - 30588529
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  30588489 ttctccatttgttccatttagagagataaagacacataaaa 30588529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 4804391 - 4804515
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  4804391 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 4804490  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  4804491 ccatctattttttgtgtctatctct 4804515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 7162027 - 7162151
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||| |||    
T  7162027 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtagtaggaccca 7162126  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  7162127 ccatctatttcttgtgtctatctct 7162151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 29698106 - 29698218
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  29698106 tttctccatttcttcaatttggagaaataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttaatggtaggatcca 29698205  T
Q  285 ccatctatttttt 297  Q
    |||||||||||||    
T  29698206 ccatctatttttt 29698218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 21159523 - 21159381
Alignment:
Q  165 gggttaggatcctctccat--atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggg 262  Q
    ||||||||||||||||| |  || | ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21159523 gggttaggatcctctccgtttatgtgtccatttcttcaatttggagatataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggg 21159424  T
Q  263 acctacttattggtaggatccaccatctattttttatgtctat 305  Q
    ||| ||||| |||||||| |||||||||||||||| |||||||    
T  21159423 acccacttagtggtaggacccaccatctattttttgtgtctat 21159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 1249278 - 1249166
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  1249278 tttctccatttcttcaatttggaaagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 1249179  T
Q  285 ccatctatttttt 297  Q
    |||||||||||||    
T  1249178 ccatctatttttt 1249166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 17944105 - 17944229
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||||||| | |    
T  17944105 tttctccatttcttcaatttggagagataaaaacacataaaatcttggaaaaagtaaaatataattaatgatggtgggacccatttagtggtaggaccta 17944204  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  17944205 ccatctattttttgtgtctatctct 17944229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 12412582 - 12412704
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    ||||||||||||||||||  ||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| |||||    
T  12412582 tctccatttcttcaatttggagagataaaaatacataaaattttgaaaaaagtaaaatataattaatgatggtggaacccacttagtggtaggacccacc 12412681  T
Q  287 atctattttttatgtctatctct 309  Q
    |||||||| || |||||||||||    
T  12412682 atctatttcttgtgtctatctct 12412704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 27826481 - 27826605
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  ||||||||||||||||||||  ||  ||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  27826481 tttctcaatttcttccattttgagagataaagacacataaaaaattttaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 27826580  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  27826581 ccatctattttttgtgtctatctct 27826605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 32737817 - 32737889
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 257  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32737817 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatg 32737889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 227695 - 227571
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||| ||||||  ||||||| ||||||| ||| | |||||||| |||||| ||||| ||||||||||||| | ||||| |||||||| ||||    
T  227695 ttctccatttctacaatttggagagatatagacacacaaagttttgaaaaaggtaaaaaataatcaatgatgatgggatccacttagtggtaggacccac 227596  T
Q  286 catctatt-ttttatgtctatctct 309  Q
    |||||||| |||| |||||||||||    
T  227595 catctattcttttgtgtctatctct 227571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 13089849 - 13089757
Alignment:
Q  217 acacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||| || ||||| |||||||| ||||||||||| |||| |||||||||||    
T  13089849 acacataaaattttgaaaaaaataaaatataattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctct 13089757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 30460763 - 30460831
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaat 253  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30460763 tttcttcatttcttctatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaat 30460831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 2800699 - 2800619
Alignment:
Q  229 ttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||||||| ||||| ||||||| ||||||| ||||| ||||| ||||||| ||||||||| | |||||||||||    
T  2800699 ttgaaaaaagtaaaaaataatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctct 2800619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 24484870 - 24484946
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||||||  |||||||| |||||||||||    
T  24484870 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctct 24484946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 1516297 - 1516243
Alignment:
Q  209 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 263  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  1516297 agataaatacacataaaattttaaaaaaagtaaaatataattaatgatggtggga 1516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 1518386 - 1518332
Alignment:
Q  209 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 263  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  1518386 agataaatacacataaaattttaaaaaaagtaaaatataattaatgatggtggga 1518332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 13888603 - 13888530
Alignment:
Q  237 agtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatctct 309  Q
    ||||||| ||||||||||||||||||||| | ||| |||||||| |||||||||||| |||| ||| |||||||    
T  13888603 agtaaaaaataattaatgatgatgggacccagttaatggtaggaaccaccatctattattttgtgtatatctct 13888530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 7215936 - 7215860
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||  |||||||||||  ||||||| | ||| |||||||| |||| ||||||||| | |||||||||||    
T  7215936 aaaaagtaaaacgtaattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctct 7215860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 17828675 - 17828576
Alignment:
Q  210 gataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||| ||||||| ||||  || |||||| |||||  |||||| ||||||||||| | ||||| | |||| |||||| ||||||||| | |||||||||||    
T  17828675 gatatagacacacaaaaatttcaaaaaactaaaaattaattattgatgatgggatccacttaatagtagaatccactatctattttatgtgtctatctct 17828576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 17398804 - 17398774
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaa 237  Q
    |||||||||||||||||||||||||||||||    
T  17398804 agagataaagacacataaaatcttgaaaaaa 17398774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 2142377 - 2142301
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||| ||| || || || | ||| ||||||  |||||||| |||||||||||    
T  2142377 aaaaagtaaaaaataattaatgatggtggaacccacctaatgatgggacccaccacttattttttgtgtctatctct 2142301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 4895867 - 4895743
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  4895867 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 4895768  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  4895767 ccatctattttttgtgtctatctct 4895743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 35660741 - 35660617
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  35660741 tttctccgtttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 35660642  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  35660641 ccatctattttttgtgtctatctct 35660617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 32129749 - 32129625
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  32129749 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 32129650  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||  |||||||||||    
T  32129649 ccatctatttttggtgtctatctct 32129625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 11775735 - 11775860
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||| |||||||||||    
T  11775735 tttctccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaaagtaaaatataattaatgacggtgggacccacttagtggtaggatcc 11775834  T
Q  284 accatctattttttatgtctatctct 309  Q
    |||||||||||||| |||||||||||    
T  11775835 accatctattttttgtgtctatctct 11775860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 37266678 - 37266798
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 288  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| || |||||||    
T  37266678 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaactaaaatataattaatgatggtgggacccacttagtggtatgacccaccat 37266777  T
Q  289 ctattttttatgtctatctct 309  Q
    ||||||||| |||||||||||    
T  37266778 ctattttttgtgtctatctct 37266798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 40753293 - 40753172
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    ||||||||||||| |||||  |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||    
T  40753293 ttctccatttctttaatttggagagataaaagcacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccac 40753194  T
Q  286 catctattttttatgtctatct 307  Q
    ||| |||||||| |||||||||    
T  40753193 catatattttttgtgtctatct 40753172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 14349747 - 14349870
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||||||||||| |||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  14349747 tttctccatttctttaatttggaaagataaagacacataaa-tcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 14349845  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| ||||| |||||    
T  14349846 ccatctattttttgtgtctgtctct 14349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 18625531 - 18625429
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatc 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||| ||||| ||    
T  18625531 agagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttc 18625432  T
Q  307 tct 309  Q
    |||    
T  18625431 tct 18625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 13032062 - 13032185
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||| ||||||||  ||    
T  13032062 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaa-taaaatataattaatgatggtgggacccatttagtggtaggactca 13032160  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  13032161 ccatctatttcttgtgtctatctct 13032185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 39902358 - 39902482
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | | ||| |||||||| |||    
T  39902358 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaatccatttagtggtaggaccca 39902457  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || ||| |||||||    
T  39902458 ccatctatttcttgtgtttatctct 39902482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 4592744 - 4592855
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||| || |||    
T  4592744 tttctccatttcttcaatttggagagataat-acacataaaatattgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaagaccca 4592842  T
Q  285 ccatctatttttt 297  Q
    |||||||||||||    
T  4592843 ccatctatttttt 4592855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 3057284 - 3057162
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    ||||||||||||| ||||  |||||||||||||| |||| | || ||||||||||||||||||||||||| ||| |||  ||||| ||||||||||||||    
T  3057284 tctccatttcttctatttgaagagataaagacacttaaattttttaaaaaagtaaaatataattaatgattatgtgactcacttaatggtaggatccacc 3057185  T
Q  287 atctattttttatgtctatctct 309  Q
    ||||||||||| ||| |||||||    
T  3057184 atctattttttgtgtttatctct 3057162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 34827140 - 34827259
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatccacca 287  Q
    |||||||||| |||||  |||||||||||||||  |||| ||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||    
T  34827140 tccatttcttaaatttgaagagataaagacaca--aaattttgaaaaaaagtaaaatataattaaagatggtgggacccacttagtggtaggatccacca 34827237  T
Q  288 tctattttttatgtctatctct 309  Q
    |||||||||| |||||||||||    
T  34827238 tctattttttttgtctatctct 34827259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 1475764 - 1475690
Alignment:
Q  191 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1475764 catttcttcaatttggagtgataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 1475690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 307
Target Start/End: Complemental strand, 8441103 - 8440981
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||| |||| |||||||  ||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||  ||||| ||||| |   ||    
T  8441103 tttctccgtttcatcaatttggagagataaatacacatacaatcttaaaaaaagtaaaatataattaatgatggtgggacacacttagtggtatgtcgca 8441004  T
Q  285 ccatctattttttatgtctatct 307  Q
    ||||||||||||  |||||||||    
T  8441003 ccatctatttttggtgtctatct 8440981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 3057367 - 3057483
Alignment:
Q  193 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 292  Q
    ||||||| ||||  ||||||||||||||| ||||  |||||||||||| || ||||||||||||||||| ||  ||||  |||||||||||| ||||| |    
T  3057367 tttcttccattttgagagataaagacacaaaaaagtttgaaaaaagtataaaataattaatgatgatggaactcactttgtggtaggatccatcatcttt 3057466  T
Q  293 tttttatgtctatctct 309  Q
    ||||| |||||||||||    
T  3057467 tttttttgtctatctct 3057483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 43309062 - 43309175
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||          ||||||||||| ||| ||| | ||| ||||| |||||||    
T  43309062 ttctccatttcttcaatttgaagagataaagacacataaaatcttgaaaaa----------aattaatgatggtggaacccatttaatggtaagatccac 43309151  T
Q  286 catctattttttatgtctatctct 309  Q
     |||||||||||||||||||||||    
T  43309152 tatctattttttatgtctatctct 43309175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 32793339 - 32793441
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatc 306  Q
    ||||||||||||  |||||||||||||||||||||||||||||| |||||  ||||||||||||| | ||| ||  || |||||||||||| ||| ||||    
T  32793339 agagataaagacgaataaaatcttgaaaaaagtaaaatataattgatgattgtgggacctacttagtagtaagaatcatcatctattttttgtgtatatc 32793438  T
Q  307 tct 309  Q
    |||    
T  32793439 tct 32793441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 28142881 - 28142807
Alignment:
Q  213 aaagacacataaaa-tcttgaaaaaa-gtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||  ||||| |||||||||||||    
T  28142881 aaagacacataaaaatcttgaaaaaaagtaaaatataattaatgatggtgggactcacttaatggtaggatccac 28142807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 36290593 - 36290669
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||| | ||||| || ||||| ||||||  |||||||| |||||||||||    
T  36290593 aaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctct 36290669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 27428949 - 27428889
Alignment:
Q  249 ttaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||| ||| ||  ||||| ||||||||| ||||||||||||||| |||||||||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctct 27428889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 29340999 - 29341062
Alignment:
Q  246 taattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||| ||||||| ||||| | |||||| |||| ||||||||| | |||||||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctct 29341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 17247397 - 17247473
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||| ||||||| ||  ||||| || ||| | |||||| |||||||||  ||||||||||    
T  17247397 aaaaagtaaaaaataattaattatgatggaacgcacttaatgatagaacccaccacctattttttgcgtctatctct 17247473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 31546477 - 31546553
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||| |||||  |||||||| ||||||||| | ||||| | |||||  |||||||||||||| |||||||| ||||    
T  31546477 aaaaactaaaaagtaattaattatgatgggatccacttaatagtagggcccaccatctattttatatgtctacctct 31546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 43222129 - 43222193
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||||| ||||| | | ||| || || || |||||||||||||||| |||||||||||    
T  43222129 ataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctct 43222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 27033594 - 27033718
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| |||    
T  27033594 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggatccacttagtggtaggaccca 27033693  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||||||||| || |||||||||||    
T  27033694 ccatctatttcttgtgtctatctct 27033718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 34373774 - 34373898
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||    
T  34373774 tttcttcattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacctaattagtggtaggaccca 34373873  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  34373874 ccatctattttttgtgtctatctct 34373898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 34373717 - 34373593
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  34373717 tttctccatttcttcaatttggagagataaagagacaaaaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 34373618  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||  |||||||||||    
T  34373617 ccatctatttttagtgtctatctct 34373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 43720079 - 43719955
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  43720079 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 43719980  T
Q  285 ccatctattttttatgtctatctct 309  Q
    | || |||||||| |||||||||||    
T  43719979 caatttattttttgtgtctatctct 43719955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 19830560 - 19830443
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccacca 287  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||| |||||||| ||||||    
T  19830560 tccatttcttcaatttggagagataaagacacataaaatctttaaaaaaggtaaaatataattaatgatggtgggacccacttaatggtaggacccacca 19830461  T
Q  288 tctattttttatgtctat 305  Q
    |||||||||| |||||||    
T  19830460 tctattttttgtgtctat 19830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 40851690 - 40851839
Alignment:
Q  165 gggttaggatcctctccat------atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatat-aattaatgatg 257  Q
    |||||||||||||||||||      |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40851690 gggttaggatcctctccatttatgtatttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatatgatttaatgatg 40851789  T
Q  258 atgggacctacttattggtaggatccaccatctattttttatgtctatct 307  Q
     | ||||| ||||| |||| | | |||||||||||||||| |||||||||    
T  40851790 gtaggacccacttagtggttgaacccaccatctattttttgtgtctatct 40851839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 2229926 - 2230050
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||| |||    
T  2229926 tttctctatttctttaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtggtaggaccca 2230025  T
Q  285 ccatctattttttatgtctatctct 309  Q
     |||||||||||| |||||||||||    
T  2230026 tcatctattttttgtgtctatctct 2230050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 46167340 - 46167460
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 288  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||| | ||| | ||||| |||||||| |||||||    
T  46167340 tccatttcttcaatttagagagataaagacaaatataatcttgaaaaaagtaaaatataattaataatggtaggatccacttagtggtaggacccaccat 46167439  T
Q  289 ctattttttatgtctatctct 309  Q
     |||||||| |||||||||||    
T  46167440 atattttttgtgtctatctct 46167460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 550948 - 550836
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| || ||||||||||||||||| |||| ||| ||||||| ||||| || |||||||||    
T  550948 tttctccatttcttccatttggagagataaagatacataaaatttttaaaaaagtaaaatataaataataatggtgggacccacttaatgataggatcca 550849  T
Q  285 ccatctatttttt 297  Q
    |||||||||||||    
T  550848 ccatctatttttt 550836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 48084763 - 48084887
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||| | ||||  ||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  48084763 ttctccatttctaccatttggagagatatagacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 48084862  T
Q  286 catctatt-ttttatgtctatctct 309  Q
    |||||||| |||| |||||||||||    
T  48084863 catctattcttttgtgtctatctct 48084887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 12402930 - 12403033
Alignment:
Q  207 agagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctat 305  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||  ||||| |||||| |||||||||||| ||||||| |||||    
T  12402930 agagataaagacacataaaatcttaaaaaaaagtaaaatataattaataatggtgggactcacttagtggtagaatccaccatctaatttttatatctat 12403029  T
Q  306 ctct 309  Q
    ||||    
T  12403030 ctct 12403033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 42613032 - 42613147
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| || ||||| ||    
T  42613032 atttctccatttgttctatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtgataggaccc 42613121  T
Q  284 accatctattttttatgtctatctct 309  Q
    ||||  |||||||| |||||||||||    
T  42613122 accacttattttttttgtctatctct 42613147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 566898 - 566794
Alignment:
Q  192 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatcta 291  Q
    |||||||| ||||  ||||||||| | |||||||||||||||||| ||||||||||| |||| | | ||||||| ||||| || |||||||| |||| ||    
T  566898 atttcttccatttggagagataaaaatacataaaatcttgaaaaa-gtaaaatataaataataaaggtgggacccacttaatgataggatccgccatata 566800  T
Q  292 tttttt 297  Q
    ||||||    
T  566799 tttttt 566794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 36354393 - 36354316
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 264  Q
    |||| ||||| |||||||| | ||||||||||||| ||||||||||||| |||| |  ||||||||||||||||||||    
T  36354393 tctcaatttcctcaatttagaaagataaagacacaaaaaatcttgaaaatagtatacaataattaatgatgatgggac 36354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 35963361 - 35963413
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctatttttt 297  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||    
T  35963361 ataattaataatgatgggacctacttattggtaggatccactatctacttttt 35963413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 31523791 - 31523676
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 283  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| |  ||||| ||    
T  31523791 atttctccatttgttccatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtaataggaccc 31523702  T
Q  284 accatctattttttatgtctatctct 309  Q
    ||||  |||||||| |||||||||||    
T  31523701 accacttattttttgtgtctatctct 31523676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 1995435 - 1995511
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| || |||  ||||||||||||||  ||  ||||||||| |||||||||||||    
T  1995435 aaaaagtaaaaaataattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctct 1995511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 2310261 - 2310330
Alignment:
Q  192 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 263  Q
    |||||||| ||||| |||||||||||||||  |||| || || ||||||||| |||||||||||||||||||    
T  2310261 atttcttccatttagagagataaagacaca--aaattttaaagaaagtaaaaaataattaatgatgatggga 2310330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 52859513 - 52859441
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaa-agtaaaatataattaatgat 256  Q
    ||||||||||||| | ||||  ||| ||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  52859513 tttctccatttctaccatttggagaaataaatacacataaaatcttaaaaaagagtaaaatataattaatgat 52859441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 25285966 - 25285845
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||||| |||| |||||||||| ||||| |||||| | |||||||| ||| | |||| |||||| |||| |  | ||| || ||||||||||    
T  25285966 ttctccatttcttccatttgtagagataaaaacaca-aaaatc-taaaaaaagtcaaaaaaaattgatgatggtgggtctcatttaatgataggatccac 25285869  T
Q  286 catctattttttatgtctatctct 309  Q
     ||||||||| | |||||||||||    
T  25285868 tatctattttatgtgtctatctct 25285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 40810441 - 40810363
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatctct 309  Q
    |||||| ||||| ||||||||||||||||||||| ||||| ||||  || |||||||||||| |||| ||| |||||||    
T  40810441 aaaaaaataaaaaataattaatgatgatgggacccacttagtggttagacccaccatctattcttttttgtttatctct 40810363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 49679354 - 49679278
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| | ||| || ||||| || |||  |||||||| |||||||||||    
T  49679354 aaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctct 49679278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 32577476 - 32577526
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa 237  Q
    |||||||||||||| ||||  ||||||||||||||| |||||||||||||||    
T  32577476 ttctccatttcttctatttggagagataaagacaca-aaaatcttgaaaaaa 32577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 3009191 - 3009233
Alignment:
Q  184 atttctccatttcttcaatttatagagataaagacacataaaa 226  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  3009191 atttctccatttgttccatttagagagataaagacacataaaa 3009233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 12151710 - 12151834
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  12151710 tttctccatttattcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 12151809  T
Q  285 ccatctattttttatgtctatctct 309  Q
    | ||||||||||| ||||| |||||    
T  12151810 caatctattttttgtgtctttctct 12151834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 12381042 - 12380924
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||| | |||    
T  12381042 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaaccca 12380943  T
Q  285 ccatctattttttatgtct 303  Q
    ||||||||||||| |||||    
T  12380942 ccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 12385109 - 12384991
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||| | |||    
T  12385109 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaaccca 12385010  T
Q  285 ccatctattttttatgtct 303  Q
    ||||||||||||| |||||    
T  12385009 ccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 50484329 - 50484453
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| | | |||    
T  50484329 tttctccatttctttaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgacggtgggacccacttagtggttgtaccca 50484428  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  50484429 ccatctattttttgtgtctatctct 50484453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 50294195 - 50294071
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||| |||||||| |||    
T  50294195 tttctcaatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtaggatccacttagtggtaggaccca 50294096  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  50294095 ccatctattttttgtgtctatctct 50294071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 23862088 - 23861960
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaa-aaaagtaaaatataattaatgatgatgggacctacttattggtaggat-- 281  Q
    |||||| |||||||||||||  | ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| | ||||| |||||||||      
T  23862088 tttctctatttcttcaatttggaaagataaagacacataaaatcttgaaaaaaaataaaatataattaatgatggtgggatccacttagtggtaggattc 23861989  T
Q  282 -ccaccatctattttttatgtctatctct 309  Q
     |||||||||||||||| |||||||||||    
T  23861988 accaccatctattttttgtgtctatctct 23861960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 7841838 - 7841763
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 264  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7841838 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggac 7841763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 45977965 - 45978045
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  45977965 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaacgatgctgggacc 45978045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 24977187 - 24977307
Alignment:
Q  189 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccacca 287  Q
    ||||||||||  ||||| ||||||||| ||| |||||||||||||||||  |||||||||| |||||||  ||| ||| ||||| |||||||||||||||    
T  24977187 tccatttcttacatttagagagataaataca-ataaaatcttgaaaaaaaataaaatataactaatgattgtggaacccacttagtggtaggatccacca 24977285  T
Q  288 tctattttttatgtctatctct 309  Q
    |||||||||| |||||||||||    
T  24977286 tctattttttgtgtctatctct 24977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 40328219 - 40328344
Alignment:
Q  185 tttctccatttcttcaatttatagagataaa-gacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatc 282  Q
    ||||| |||||||| |||||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||| ||| ||||| |||| ||| |    
T  40328219 tttcttcatttctttaatttggagagataaaagacacataaaatcttgaaaaaaagtaaaatataactaatgatggtggaacccacttagtggtgggacc 40328318  T
Q  283 caccatctattttttatgtctatctct 309  Q
    ||||||||| ||||| |||||||||||    
T  40328319 caccatcta-tttttgtgtctatctct 40328344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 18976398 - 18976312
Alignment:
Q  223 aaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt-ttttatgtctatctct 309  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||    
T  18976398 aaaattttgaaaaaaataaaa-ataattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctct 18976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 48327279 - 48327162
Alignment:
Q  192 atttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccaccatct 290  Q
    |||||||| ||||  ||| ||||||  |||||||||||||||||||  ||||||||||||||||||| ||| ||| ||||| ||||||||  ||||||||    
T  48327279 atttcttccatttggagatataaaggtacataaaatcttgaaaaaaaataaaatataattaatgatggtgg-acccacttagtggtaggactcaccatct 48327181  T
Q  291 attttttatgtctatctct 309  Q
    ||||||| |||||||||||    
T  48327180 attttttttgtctatctct 48327162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 5047510 - 5047403
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    ||||||||||||| ||||| |||||||||| |||| ||||  ||||||||| || || ||||||||||||| ||||||| || || ||||||||||||      
T  5047510 tctccatttcttccatttagagagataaaggcacaaaaaagtttgaaaaaa-tataaaataattaatgatggtgggacccacatagtggtaggatccatt 5047412  T
Q  287 atctatttt 295  Q
    |||||||||    
T  5047411 atctatttt 5047403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 2845208 - 2845291
Alignment:
Q  185 tttctccatttct-tcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggaccta 267  Q
    |||||| |||||| |||||||  ||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  2845208 tttctctatttctatcaatttggagagataaatacacacaaaattttgaaaatagtaaaatataattaatgatggtgggaccta 2845291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 32361377 - 32361315
Alignment:
Q  247 aattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |||| |||| ||||||    
T  32361377 aattaatgatgatgggacctacttagtagtaggatccaccatctatcttttgtgtccatctct 32361315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 45970811 - 45970864
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatg 260  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  45970811 agagataaagacacacaaaattttgaaaaaagtaaaaaataattaatgatgatg 45970864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 52280123 - 52280047
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||| | ||||| || ||||| ||||||  ||||||||||||||||||||    
T  52280123 aaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctct 52280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 46608504 - 46608409
Alignment:
Q  188 ctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 285  Q
    |||||||||||| ||||  ||| |||||||||||  || | ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| ||||    
T  46608504 ctccatttcttccatttggagaaataaagacaca--aagttttgaaaaaagtaaaaaataattaatgatggtgggtcccacttagtggtaggacccac 46608409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 40988658 - 40988723
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataatt 250  Q
    ||||||||||| ||| ||||  ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  40988658 tttctccattttttctatttggagagataaagacacacaaaattttgaaaaaagtaaaaaataatt 40988723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 32887910 - 32887790
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    ||||||||||||  ||||  ||||||| |||| || ||||  ||||||||| |  || ||||||||||||| ||||||| | ||| |||||||||||||     
T  32887910 tctccatttctttcatttggagagatatagactcaaaaaagtttgaaaaaaattgaaaataattaatgatggtgggacccatttaatggtaggatccact 32887811  T
Q  287 atctattttttatgtctatct 307  Q
    || |||||| | |||||||||    
T  32887810 atttattttatgtgtctatct 32887790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 39426201 - 39426277
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||  ||||||| | ||| |||||||| |||| ||||||||| | |||||||||||    
T  39426201 aaaaagtaaaaaataattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctct 39426277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 7783312 - 7783206
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||| |||||||||  |||| | |||||||||||| |||||| |  |||||| ||||||||||||||||||| ||  | | ||||| || |||||||||    
T  7783312 tttcttcatttcttccgtttaaaaagataaagacacgtaaaatttaaaaaaaattaaaatataattaatgatggtgcaatccacttaatgataggatcca 7783213  T
Q  285 ccatcta 291  Q
    | |||||    
T  7783212 caatcta 7783206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 32618791 - 32618853
Alignment:
Q  232 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattt 294  Q
    |||||| |||||  |||||||||||| ||||||||||||| | ||||||||||| ||||||||    
T  32618791 aaaaaactaaaaagtaattaatgatggtgggacctacttaatagtaggatccactatctattt 32618853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 5854934 - 5854854
Alignment:
Q  229 ttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||| || || ||||||||||||||||||| | | ||  |||||||||||||  || | |||||||||||||||||    
T  5854934 ttgaaaaaaatataaaataattaatgatgatgggatccattttatggtaggatccactctcaaatttttatgtctatctct 5854854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 7844939 - 7845043
Alignment:
Q  193 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 292  Q
    ||||||| ||||  ||||||||||| ||| | ||  |||||||||||| ||  |||||||| ||| ||||||  ||||| ||||||||||||  ||||||    
T  7844939 tttcttccatttgaagagataaagatacaaagaagtttgaaaaaagtataaactaattaataatggtgggacacacttagtggtaggatccaatatctat 7845038  T
Q  293 ttttt 297  Q
    |||||    
T  7845039 ttttt 7845043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 24413354 - 24413291
Alignment:
Q  245 ataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctc 308  Q
    ||||||||||||| ||||||| | ||| || ||||| |||||||| ||||||| ||||||||||    
T  24413354 ataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 26372218 - 26372292
Alignment:
Q  207 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatc 282  Q
    ||||||| |||| || ||||| ||| ||||||||||| |||||||||| || ||||||| ||||| ||||||||||    
T  26372218 agagatatagactcaaaaaat-ttggaaaaagtaaaaaataattaatggtggtgggacccacttaatggtaggatc 26372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 42720888 - 42720837
Alignment:
Q  186 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa 237  Q
    |||||||||||||  ||||| ||||||||||||||||||| | |||||||||    
T  42720888 ttctccatttctttcatttagagagataaagacacataaagttttgaaaaaa 42720837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 49384788 - 49384720
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 257  Q
    |||||||||| || ||||| |||||||| ||||||  ||||||||||||||||| ||  ||||||||||||    
T  49384788 tctccatttcctccatttaaagagataaggacaca--aaatcttgaaaaaagtataaagtaattaatgatg 49384720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 1228618 - 1228582
Alignment:
Q  229 ttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  1228618 ttgaaaaaagtaaaaaataattaatgttgatgggacc 1228582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 26860134 - 26860058
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||  ||||| | ||||| || ||||| | || ||||||||| | |||||||||||    
T  26860134 aaaaagtaaaaaataattaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctct 26860058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 30077728 - 30077652
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||  ||||||  ||||| || ||| | ||||||  |||||||| |||||||||||    
T  30077728 aaaaagtaaaaaataattaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctct 30077652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 16529 - 16405
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||||||||||||||||||  |||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||    
T  16529 tttctccatttcttcaatttggagagataaaattacataaaatcttgaaaaaaataaaatataattaatgatgatgggacccacttagtggtaggaccca 16430  T
Q  285 ccatctattttttatgtctatctct 309  Q
    |||| |||||||| |||||||||||    
T  16429 ccatttattttttgtgtctatctct 16405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 7090 - 7214
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    ||||| ||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| | |||||| |||    
T  7090 tttcttcatttcttcaatttgcagagataaagacatataaaatcttgaaaaaaataaaatataattaatgatggtggaacccacttaatagtaggaccca 7189  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||||| |||||||||||    
T  7190 ccatctattttttgtgtctatctct 7214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 22572 - 22450
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 286  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||| ||  ||||| |||||||||||||     
T  22572 tctccatttcttacatttagagagataaatacacataaaatcttgaaaaaagtaaaatataattaattattgtggaactcacttagtggtaggatccact 22473  T
Q  287 atctattttttatgtctatctct 309  Q
    ||||||||||| |||||||||||    
T  22472 atctattttttgtgtctatctct 22450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 73972 - 73892
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  73972 tttctccatttcttcaatttagagagataaaaacacataaaatcttgaaaaaaataaaatataattaatgatgatgggacc 73892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 13641 - 13719
Alignment:
Q  187 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 265  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13641 tctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 13719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 309
Target Start/End: Complemental strand, 6585 - 6443
Alignment:
Q  165 gggttaggatcctctccatatttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 264  Q
    ||||||||||||||||||| | | |   ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||    
T  6585 gggttaggatcctctccatttatgtg--tttcttcaattttgagagataaagacacataaaatcttggaaaaagtaaaatataattaatgatggttgtac 6488  T
Q  265 ctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    | | ||| | |||||| |||||||||||||||| ||||| |||||    
T  6487 ccatttagttgtaggacccaccatctattttttgtgtctgtctct 6443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 9330 - 9209
Alignment:
Q  185 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 284  Q
    |||||| |||||||| ||||  |||||||||| ||||| ||||||| ||||||    |||||||||||||||| ||| | | ||||| |||| ||| |||    
T  9330 tttctcaatttcttccatttggagagataaaggcacatgaaatcttaaaaaaat---aatataattaatgatggtggaatccacttagtggttggaccca 9234  T
Q  285 ccatctattttttatgtctatctct 309  Q
    ||||||||||| | |||||||||||    
T  9233 ccatctattttctgtgtctatctct 9209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 58684 - 58747
Alignment:
Q  246 taattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||| |||||||    
T  58684 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctct 58747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 17390 - 17314
Alignment:
Q  233 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttttatgtctatctct 309  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||| ||  |||||||| |||||||||||    
T  17390 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctct 17314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 5559 - 5632
Alignment:
Q  191 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 264  Q
    ||||||||| ||||  ||||||||||||| | | ||  |||||||||||| || ||||||||||||||||||||    
T  5559 catttcttccatttggagagataaagacataaagaagtttgaaaaaagtataaaataattaatgatgatgggac 5632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 423 times since January 2019
Visitors: 6703