View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_low_34 (Length: 318)
Name: NF0915_low_34
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14074782 - 14075003
Alignment:
| Q |
1 |
cgttccaaactattgatattatggctgagaagttgggactggttcccaccattaaggaccgagctaacgagatatataagcgtgttgaagatcagaagtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
14074782 |
cgttccaaactattgatattatggctgagaagttgggactggttcccaccattaaggaccgagctaatgagatatataagcgggttgaagatcagaagtc |
14074881 |
T |
|
| Q |
101 |
tagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14074882 |
tagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgatt |
14074981 |
T |
|
| Q |
201 |
gccaatggagccaccaagaagg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14074982 |
gccaatggagccaccaagaagg |
14075003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13609725 - 13609946
Alignment:
| Q |
1 |
cgttccaaactattgatattatggctgagaagttgggactggttcccaccattaaggaccgagctaacgagatatataagcgtgttgaagatcagaagtc |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
13609725 |
cgttcaaaactattgatactatggctgagaggttgggactggttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtc |
13609824 |
T |
|
| Q |
101 |
tagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgatt |
200 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | | || |
|
|
| T |
13609825 |
tagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcttgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggtt |
13609924 |
T |
|
| Q |
201 |
gccaatggagccaccaagaagg |
222 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
13609925 |
gccaatggagccacaaagaagg |
13609946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 14150203 - 14150414
Alignment:
| Q |
11 |
tattgatattatggctgagaagttgggactggttcccaccattaaggaccgagctaacgagatatataagcgtgttgaagatcagaagtctagtaaggga |
110 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| | ||||||||| |||||||| | |
|
|
| T |
14150203 |
tattgatactatgactgagaagttgggactggttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggca |
14150302 |
T |
|
| Q |
111 |
agaaatcaggaagcattattggctgcttgcgtctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgattgccaatggag |
210 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||| | ||||| |
|
|
| T |
14150303 |
agaaaccaggacgcattattggctgcttgcctctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgctattggag |
14150402 |
T |
|
| Q |
211 |
ccaccaagaagg |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14150403 |
ccaccaagaagg |
14150414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 36012786 - 36012663
Alignment:
| Q |
55 |
aggaccgagctaacgagatatataagcgtgttgaagatcagaagtctagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgcttg |
154 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
36012786 |
aggaccgagctaatgagatatataagcgggttgaagatcagaagtctagcaggggaagaaatcaggacgcattattggctgcttgcctctacattgcttg |
36012687 |
T |
|
| Q |
155 |
tcgacaagaagacaagccacgcac |
178 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36012686 |
tcgacaagaagacaagccacgcac |
36012663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 22091012 - 22090900
Alignment:
| Q |
54 |
aaggaccgagctaacgagatatataagcgtgttgaagatcagaagtctagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgctt |
153 |
Q |
| |
|
||||| ||||| || |||||||||||| | |||||||| || |||||||||| ||||||||||| || || || ||||||||||| ||||||| |||| |
|
|
| T |
22091012 |
aaggatcgagcaaatgagatatataagagggttgaagaccaaaagtctagtagaggaagaaatcaagatgctttgttggctgcttgtatctacatcgctt |
22090913 |
T |
|
| Q |
154 |
gtcgacaagaaga |
166 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
22090912 |
gccgacaagaaga |
22090900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 580 times since January 2019
Visitors: 6705