View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_35 (Length: 314)
Name: NF0915_low_35
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 35158508 - 35158615
Alignment:
| Q |
15 |
aatatacacctctgctaaagttgtcggcataggagatgtgaagttgtacttcacatccagaaagaaattgtttctcgaggacgtgatgcatgctccaaag |
114 |
Q |
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| T |
35158508 |
aatatacacctctgctaaagttgtcggcataggagatgtgaagttgtacttcacatccagaaaaaaattgtttctcgaggacgtgatgcatgctccaaag |
35158607 |
T |
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| Q |
115 |
ataagaag |
122 |
Q |
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|||||||| |
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| T |
35158608 |
ataagaag |
35158615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 35158875 - 35158954
Alignment:
| Q |
144 |
cctattctcttaaaatgaacaataaagttagaagaaagaataatatctttactaagttagttgttgcaatcatgcttaat |
223 |
Q |
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| T |
35158875 |
cctattctcttaaaatgaacaataaagttagaagaaagaataatatctttaccaagttagttgttgcaatcatgcttaat |
35158954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 12113812 - 12113887
Alignment:
| Q |
46 |
ggagatgtgaagttgtacttcacatccagaaagaaattgtttctcgaggacgtgatgcatgctccaaagataagaa |
121 |
Q |
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| T |
12113812 |
ggagatatgaagttgtaattcacatccgaaaagaaaattattctctaggacgtaatgcatgctccaaaaataagaa |
12113887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 20506911 - 20506876
Alignment:
| Q |
86 |
ttctcgaggacgtgatgcatgctccaaagataagaa |
121 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
20506911 |
ttctctaggacgtgatgcatgctccaaagataagaa |
20506876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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